Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00605 ATGGAGATTGGGGAGATGGGTAGAAAGGAGCCACAAGTTGAGGTTCCTTTGGTCCCCGCCACCCCTATTAAGCCTGTTCCTCTAAAACCAGTGCCGATCTACACACCTGGGGAGATTAACCAAATGGGCTATCATGCAAATGGAGCAGTTGCATGTGTTGAATTTTTAATTGGCCAAGAGAAATTGTGTAGGTCGGATGTTGGGTCAAACGTCGCAGGTGACAGTGGAAGAACTTGTGAACATACAGCTTCGGATGCTGCTTCCAGCAAACTCGGGTTTTGTGAACATTTGTTCGCAGTTGAGGCTGAATCGAGGAACTCTAGTGTTACACAAGGGAATAATGAAGGATTGAAAAATCCATTTGTTCCTTCACTCATCCTTGACAATATCCGAGACCCTCAGGAAACATACATTGCTTGCTGTAGCAACAGAACTTCACAGGATACCCCATTTACACTTGACAATGCCAACAAAGAAAACAGACAAATAGCATCAATGCAAATCAATATGGAAGAAAATGATCCAGGAGGGGAAGAGAGAACTGGCCATGCCAGTAAGCTTGACATTAATGTACTGCCGAGCAGCAAAGAACTCTGTGACCCTGCCATTGAATTTGGTGCTATTTCTTCACCATTCAAAGAGAATCAAAACCAAGATAAGGGAACCAATCTTGATACCGATCTTAATAAAACACCACAACAAAAACCAAGGAGAAGAAAGCACCGTCCCAAGGTCATCAAAGAAGGAAAACCCAAAAGAACTCCGAAGCCTGTTACCCCAAAGCCTGTTCAATCAAAAGAAAACCCAACTGTGAAGAGGAAATATGTGAGAAAAAATGCACTGAGCAAGACTTCTATTCCTCCAACGGAAGTGACTAGAGAATTGACCAAAGAAATGCCTGAAACTGCCAAAATGTCTTGTAAAAGAGCCATAAATTTTGACATGGGAACTAGAGATGAAAGTTCTGCTGGCATAGAAAACACAATTGCACTATTGGGAAAAGGAAATGGTGTGGATGTAGGCCTTGCATATGATCTAGACACTTCTGTGAAGCAGGTGTCAAACAGTTACACATCACTACCAGAAGACACACAAGCCCTAAATATATTTCCTTTGGAAAGAAAAGGCTGGGGAACAATGCCAGCTCCCAAGAGGAAGTATGTGAAAAGGAAAGGAGTGAACATGACTTCTGCTCCTGCAGCCGAAATGACTAAAGAGATCCCCCAATATACCCAAATGTCATGTACAGAGTCCATAAATTTTGATGGCAGAGCAAGAGATCAAAGTTGTGCAGTCAAAGAGAATGCAACAGTGCATCCTGGTAGTGAGATTGGTGTAGTCAGTCAGGAAATGAAAGCAGGCCTATCAAACTACCTAAACACTTCCATTATGCAGCCATCAAACGATTGCATGTCATTAGCAGAAGACCCAAGTGCCCTAAATACATCTTCAGGAAGAAAAGGCTCCGTGACAGAACCAGAGAGGACAAGAGATCAAAGTCATGCAATCCAAGAGAATCCTATTGTCATTCCAGGCAGTGAAATTGGTGTAGTCATGCAGGATACTAATGTAGGCTTTGCCTATGATCTAAACACTGCCATGAAGCTGACATCATACAGTTACTTGTCATTACCAGAAGAAACACAAGCCACAAATACATCTTCAAGAAAAAAAAGATCTGGGACAAAGCCAGAGGAAAACCCAACTGCTAAGAGGAAGTATGTGAGAAAGAAAGGAGTGAAGACATCTGCTCCTCCAATAGAAGTACCAGGAGCATTGACTAGAGAAAAGATGTCTGCATCTGCCCAAAGATCATGCACACAGTCCATAAATTTTGATGAAAGAGCAAGAGAAAAAAGTTATGCAGTCAGAGAGAATCTAAGTGGACATCCAGGCAGTGAAATGAATGTAAGCCTTGCGTATGATTTTAACACTTCCACAAAGCAGACATTAAATGAAGACATGACATTACCTAAGGACGCACAAGCCCCAGGTCCATCCTCAAAAATCAATCTCCCTGGGACAAATACAAAAGAAAACCTGACCAGCAAGAGGAAGAATGTGAGGAAAAAAGAATTGAATCTGACTATTCCTACAGAATTGACTGAAGCAGTGATACATAAATCTAACAATATGTCATGGAGAAGCTCTATAAAAAATTTAGATTCGCCCTTTGGAAAGGAAAATATGGCATTAGAGGAAACAAAAGTAGGTCTCACCTATAATCAAGACACTTGGATGAATGCAACTTCAACTAATTGCATTCCATCATCTGAGGGAACACAAGACCCTAGTACGTCTATTTTAAAATACACCCACCTTGGGGATAAGCTGAATGCCAACTCTGTTGCGAACAAAAACAAAGGCCATGCAACTACTCAGGATGGAAATATCTGTAATAGTCAAAGTTCTACCATAAGGTTACAAATGGTTGGTACAAAGAGGAAATGTTCTGGTAGCTTTAGTCATGCAGATGACAGCAACATGAATCTGACTGGAGCACACTATAATGAATTGTCATCATACCAGACTAGCTTTTGCCCTCCGTTTCCAAACATACAGAAAAAAATGAGAACTCAAAAGGAGAAAACTTCTGCCACGGATGTCACATCTGTGACTGCAACCAAAGAACTCCAACAGACATACCCTCAGGAAGATGCTCTAGGACATCCTTATGCATCAAGCTCTAGCTGCTGTTTTTATGGATCTGGATATAATACAATAGGAGTCCCGGTCATTAGTGAATTTACTGAAAAATTCATAGATAATACTCAAACATTTGACGAGTTTATCTTGTCTTTGAAAAGGATGGCAGAAAGGTCTCAAACCTCTAATTGTGATTCTGGTTCTCCAACCAGAATTAGGAACTGTGATACTGAACCAAATTATACTACAAAACAAGTAGGGATTTCTGACAGGGAAACATTTGGGGATGCAAAAAGACCTCAAACATGCATTGGTGCTTTAGTCGCAGAGACACCTACATCACTTCCAAAAAAGAAGCGGAATAGAAAGAAAAAGGTCCTTTCCAGTTCAGCACATTCTAACACAAACGGGATGCTACAGCACCATAATTTTACATTGGGAAATTACTCTATGTCAGTGGGGAAGTCATCAGATGTTGCTTCCGAAGTACTGTGGAAAACCATGAACTATGTTGATGCATTAGCATTGCACTTTAGACGACTAAACATAAACACAGAAGCCAGAGACCTCTCATTTCATGAGCAGAATGCACTTGTTCTGTATAAACAGCAAAATCAAAAGCAAAACAGCCTTATCCGTGTAGATGGAGCCATTGTTCCCTTTCAGATCAAGAAACAGCATCTACGACCAAAGGTTGACCTTGATGATGAGACTGATAGAGTGTGGAAGCTTTTGTTGCTTGATATAAACAGTCCTGGAATTGATGGAACAGATGAAGACAAGGCCAAATGGTGGGAAGAAGAGCGAAATGTGTTCAGAGGACGAGCAGACTCATTTATTGCACGAATGCATCTTGTACAAGGAGACAGACGATTTTCTCGATGGAAAGGATCAGTTGTGGATTCAGTGGTTGGAGTTTTCCTCACCCAGAATGTCTCTGACCATCTTTCCAGCTCTGCATTTATGTCCCTTGCTGCTCGATTTCCCAAAAATTCAGGCAGCATGTGCAAAGCACAACAGGCAGAAGACACAAGGCTGGTAGAAGAACCACAAGTGCATGTAGTTGAACCAGAAGAGGGCACTGAATGGAACGTAAAATTATTGAATCAATCTGTTTATGACCAGAGTTCTTTGACAACAGATATAGTTGAGCATTCTGGAGAAAAAGAAGCCATCAACAGCAATGATTCCTGTGGAACTACCAGCAGTGTAATTAGCTTGTCAGATGAATCAAACTCCAGATTGTCAGTATCATCTCAACAAAATATTAAGGAACACTGTAGTCCTATGGGGAGTAGACTATGTTGTTCCACAATTGAGGAAAGAGAAGAAAAATCATGTTATGATGGTGATAGGAAAGAGTTAATTGACATAGTTTCATCCCAAGGCTCTGTCATTTCATCTCAAATTTCTGGAGATTTTTCAAATGATCAAAATCCTGAGAAAATAGGATCATGCTCAGATAGCAACTCGGAAGTAGAAGTTCTGTCCAACACAGCAAAGTACAATCACTTTGATAGTAACACTTCTTTCAGTAAACTCCTCGAAATGGTTAGTTCAACCAAGTTTTATGAAGATAACAATCATAAAAGCAAATCAAATGAGAACTTCAGAGATGCATATGATCAACCTTTATGTATGCAGCATGACAACCCAATAGAAAGCTTGGGAAAATCAAGTGTTACTCAAGGCTCTTCTGAAGCATCCATTAACGTGTCCCATGATTGCTTTGATCCTTTCAAAACCAAATCATCAACGCATGACTTCTTAAAGAAAAAGAATGAAAATGGCATGAACAAATCTAGTTTTCAAACAACAGAACCTGCTGGCGAAGTTGCAATTACTCTTTCTCAAACTATTGTGTCTCAAGTCCATCAGGAACAAAGCAATCACCAGCAGCAAAGCTTTTTCAATTTCAACAGCCCTGGACAAACTCAAGGTATTATGCAGAAAGAAAGGGGATCAGATCTTGGCAAGCACAAAAGTGCAACAAGGAATGGGACCAATGAGATAAGTTCTGCCCCAATAAAAGTAAAGAGCAAGGAACAAGGAAAAGATAAAAAGGATGATTTTAACTGGGATAGTTTAAGAATAGAAGCACAAGCTAAGGCTGGGAAAAGAGAGAAGACAGAAAACACCATGGATTCTTTGGATTGGGATGCTGTGAGATGTGTAGATGTCAGTGAAATTGCCAATACCATCAAAGAACGGGGTATGAACAACAGGCTTGCAGAACGCATTCAGAGTTTCCTGAATCGACTGGTTGATGAACATGGAAGCATTGACCTTGAATGGCTGAGAGACGTTCCACCTGACAAAGCAAAAGAATACTTGCTCAGTGTAAAAGGATTGGGATTGAAAAGTGTGGAGTGTGTGCGGCTTTTAACACTGCACCACCTTGCCTTTCCGGTAGACACAAATGTTGGACGTATAGCAGTACGACTGGGGTGGGTCCCTCTGCAGCCACTGCCTGAATCACTACAGTTGCATCTCCTAGAATTGTACCCAGTTTTGGAATCAATACAAAAATACCTCTGGCCTCGACTGTGCAAGCTAGATCAAAAAACACTATATGAGCTACATTACCAGATGATTACATTTGGAAAGGTCTTTTGTACAAAAAGCAAACCAAATTGTAATGCATGCCCAATGAGAGGAGAATGTAGACATTTTGCTAGCGCATTTGCAAGTGCAAGGCTTGCACTGCCTGGACCAGAGCAGAAGAGCATAGTTAGCACAGCTGCAAATAGTGTGATTGACCAGAAGCCATCTGAAATCATCAGTCAGTTGCACTTGCCTCCCCCAGAAAACACAACCCAAGCAGAAGAAATTCAGCTAACAGAAGTGAGCAGGCCATTGGAATCAAAGTCTGAAATAAATATTTGTCACCCTATCATTGAAGAGCCAACAACTCCAGAGCCAGAATGCTCCCAAGAATCACAAGCTGACATAGAGGATGCTTTCTATGAGGATTCATGTGAAATTCCTACCATCAAGCTTAACATAGAAGAGTTCACTCTGAATTTACAAAATTACATGCAACAAAAGATGGAACTTCAAGAAGGTGAAATGTCAAAGGCATTGATTGCTTTGAATCCAGAAGCTGCTTCAATTCCTATGCCCAAGCTAAAGAATGTGAGCCGATTACGAACAGAGCACTGTGTTTATGAACTCCCAGATACTCATCCTCTTCTGCAAGGGTGGGACACACGAGAGCCTGATGATCCAGGCAAATACCTTCTTGCTATATGGACTCCAGGTGAAACAGCAAATTCTATTCAGCCACCAGAAAGCAAATGTAGCTCCCGAGAAGAATATGGCCAACTCTGTCATGAGAAGGAATGTTTTTCATGCAACAGTTTCAGAGAATCTAATTCACAGATAGTTAGAGGGACACTCCTGATACCGTGTCGAACAGCTATGCGGGGAAGTTTTCCACTAAATGGCACCTATTTCCAAGTCAATGAGGTATTTTCTGACCATGAGTCCAGTCTTAACCCAATTAGTGTGCCCCGAAGTTGGATCTGGAACCTAAATAGACGAACAGTATATTTTGGAACCTCCGTGCCAACAATATTTAAAGGTTTAACAACTCAAGAAATTCAACAATGCTTTTGGAGAGGTTATGTCTGCGTGCGGGGATTTGACAGGGAAACACGAGCACCCCGTCCTCTAATGGCTAGACTACATTTCCCGGCTAGCAAGTTGGCTAAGACCAAAGAGAAGACAGAAAAGGAATCTAGTTCGGCCAAATCACGAGGATTGAAATCAAATATAGAACAGCCGGAATTGATTTCTAACAGTAACACTTTTAAGAGAGGGGAAGAAACTTCAGACAAATCAGTATTACTCATCCCATAG 6507 0.4114 MEIGEMGRKEPQVEVPLVPATPIKPVPLKPVPIYTPGEINQMGYHANGAVACVEFLIGQEKLCRSDVGSNVAGDSGRTCEHTASDAASSKLGFCEHLFAVEAESRNSSVTQGNNEGLKNPFVPSLILDNIRDPQETYIACCSNRTSQDTPFTLDNANKENRQIASMQINMEENDPGGEERTGHASKLDINVLPSSKELCDPAIEFGAISSPFKENQNQDKGTNLDTDLNKTPQQKPRRRKHRPKVIKEGKPKRTPKPVTPKPVQSKENPTVKRKYVRKNALSKTSIPPTEVTRELTKEMPETAKMSCKRAINFDMGTRDESSAGIENTIALLGKGNGVDVGLAYDLDTSVKQVSNSYTSLPEDTQALNIFPLERKGWGTMPAPKRKYVKRKGVNMTSAPAAEMTKEIPQYTQMSCTESINFDGRARDQSCAVKENATVHPGSEIGVVSQEMKAGLSNYLNTSIMQPSNDCMSLAEDPSALNTSSGRKGSVTEPERTRDQSHAIQENPIVIPGSEIGVVMQDTNVGFAYDLNTAMKLTSYSYLSLPEETQATNTSSRKKRSGTKPEENPTAKRKYVRKKGVKTSAPPIEVPGALTREKMSASAQRSCTQSINFDERAREKSYAVRENLSGHPGSEMNVSLAYDFNTSTKQTLNEDMTLPKDAQAPGPSSKINLPGTNTKENLTSKRKNVRKKELNLTIPTELTEAVIHKSNNMSWRSSIKNLDSPFGKENMALEETKVGLTYNQDTWMNATSTNCIPSSEGTQDPSTSILKYTHLGDKLNANSVANKNKGHATTQDGNICNSQSSTIRLQMVGTKRKCSGSFSHADDSNMNLTGAHYNELSSYQTSFCPPFPNIQKKMRTQKEKTSATDVTSVTATKELQQTYPQEDALGHPYASSSSCCFYGSGYNTIGVPVISEFTEKFIDNTQTFDEFILSLKRMAERSQTSNCDSGSPTRIRNCDTEPNYTTKQVGISDRETFGDAKRPQTCIGALVAETPTSLPKKKRNRKKKVLSSSAHSNTNGMLQHHNFTLGNYSMSVGKSSDVASEVLWKTMNYVDALALHFRRLNINTEARDLSFHEQNALVLYKQQNQKQNSLIRVDGAIVPFQIKKQHLRPKVDLDDETDRVWKLLLLDINSPGIDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLAARFPKNSGSMCKAQQAEDTRLVEEPQVHVVEPEEGTEWNVKLLNQSVYDQSSLTTDIVEHSGEKEAINSNDSCGTTSSVISLSDESNSRLSVSSQQNIKEHCSPMGSRLCCSTIEEREEKSCYDGDRKELIDIVSSQGSVISSQISGDFSNDQNPEKIGSCSDSNSEVEVLSNTAKYNHFDSNTSFSKLLEMVSSTKFYEDNNHKSKSNENFRDAYDQPLCMQHDNPIESLGKSSVTQGSSEASINVSHDCFDPFKTKSSTHDFLKKKNENGMNKSSFQTTEPAGEVAITLSQTIVSQVHQEQSNHQQQSFFNFNSPGQTQGIMQKERGSDLGKHKSATRNGTNEISSAPIKVKSKEQGKDKKDDFNWDSLRIEAQAKAGKREKTENTMDSLDWDAVRCVDVSEIANTIKERGMNNRLAERIQSFLNRLVDEHGSIDLEWLRDVPPDKAKEYLLSVKGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVSTAANSVIDQKPSEIISQLHLPPPENTTQAEEIQLTEVSRPLESKSEINICHPIIEEPTTPEPECSQESQADIEDAFYEDSCEIPTIKLNIEEFTLNLQNYMQQKMELQEGEMSKALIALNPEAASIPMPKLKNVSRLRTEHCVYELPDTHPLLQGWDTREPDDPGKYLLAIWTPGETANSIQPPESKCSSREEYGQLCHEKECFSCNSFRESNSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFSDHESSLNPISVPRSWIWNLNRRTVYFGTSVPTIFKGLTTQEIQQCFWRGYVCVRGFDRETRAPRPLMARLHFPASKLAKTKEKTEKESSSAKSRGLKSNIEQPELISNSNTFKRGEETSDKSVLLIP 2168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00605 2168 CDD ENDO3c 1600 1718 IPR003265 GO:0006284
Phco6g00605 2168 MobiDBLite consensus disorder prediction 996 1021 - -
Phco6g00605 2168 Pfam RRM in Demeter 2013 2113 IPR028925 -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 657 679 - -
Phco6g00605 2168 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 139 327 IPR044811 GO:0019104|GO:0035514|GO:0080111
Phco6g00605 2168 SUPERFAMILY DNA-glycosylase 1156 1775 IPR011257 GO:0003824|GO:0006281
Phco6g00605 2168 MobiDBLite consensus disorder prediction 234 249 - -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 209 270 - -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 1534 1572 - -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 210 230 - -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 2134 2154 - -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 1543 1558 - -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 1273 1295 - -
Phco6g00605 2168 FunFam DNA glycosylase/AP lyase ROS1 1674 1782 - -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 472 489 - -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 547 587 - -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 558 573 - -
Phco6g00605 2168 SMART ccc3 1753 1773 IPR003651 GO:0051539
Phco6g00605 2168 MobiDBLite consensus disorder prediction 2119 2133 - -
Phco6g00605 2168 Gene3D - 1652 1781 IPR023170 -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 1274 1295 - -
Phco6g00605 2168 SMART endo3end 1580 1752 IPR003265 GO:0006284
Phco6g00605 2168 MobiDBLite consensus disorder prediction 472 505 - -
Phco6g00605 2168 MobiDBLite consensus disorder prediction 2119 2168 - -
Phco6g00605 2168 Pfam Permuted single zf-CXXC unit 1978 2010 IPR028924 -
Phco6g00605 2168 Coils Coil 1884 1904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00605 Phco-Chr6 5971822 5981907 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00605 6 5971822 5981907 Phco6g00605 6 5971822 5981907 ECH
Phco2g02141 2 52116450 52117979 Phco6g00605 6 5971822 5981907 PCT