Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00582 ATGGCCGTTCCCGCGACGGTCGCCGCCGCGCCGGCTTCGCTTTACGTTGGAGATCTTCACCCTGACATTTCCGACACCCAACTTTACCAGGCTTTCCAGGAATTCAAAAGCCTCACTTCCGTTCGCGTGTGCAGAGATTCCATGACGAGGACGTCGCTCCGTTACGGTTATGTCAACTTTATGTCTCAGCAAGACGCAATTCGTGCAATCAAGGTGAAAAACAATTCTTATCTTTTTGGAAAAGTGATAAGGGTCATGTGGTCACATCGCGATCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTGGCAGAATCCATAGATAATGCGGGGCTACATGATTTATTTCAAAAATATGGGAATGTTCTGTCCAGCAAAGTTGTCGTGTATGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATTATGCCATTGAGAAGCTGAATGGCTCTACTGTGAGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCACTTTGCCTGGCAATGATACCAAGTATACAAATTTGTACATTAAAAACTTGGACTCGGATATTACGGAAGCACTTCTTCAGGAAAAGTTCTCCTCTTTTGGAAAAGTTATTAGCTTGGCAATTGCAAAGGATGCCAATGGGCTATCCAAGGGTTTTGCATTTGTTAACTATGATAATCCAGATGATGCTAGAAAGGCGATGGAAGCAATGAATGGATTGCAATTTGGTTCAAAGAATCTCTATGTCGCTAGGGCACAGAAGAAGGCTGAACGTGAGCAAATCTTGCATCATCAATTTGAGGAAAAACGCAAGGAGCAAATACTGAAATCAAAGGGCTCTAACCTTTATGTGAAGAACATTGATGACGGTGTTAGTGAAAAAGAACTTCGAGATCTGTTTAGTTCTTGTGGCACAATAACTTCTGTAAAAGTTATGCGAAATGACAAAGGGATAAGCAAGGGCTTTGGTTTTGTCTGCTTCTCCAATCCTGAGGAGGCTAATAAAGCTGTGAGCACTTTTTATGGATACATGTTCCACCATAAGCCACTGTATATTGCTATCGCTCAGAGGAAAGAGGATAGGAAAACACAGTTGAAGCTCAACTATGCACCGCAACAAGCAGGATTGGATGGACCTTCAACTGCAGTTATCCCTGGTGGCTTTCCACCTTACTTCTATCCAAATGTTACTTCACAGATGCTTCAATCTGGGCTTTTGTATCGACCTCTGGGATTGGGATCAGGATGGAGGGCTAATGACTTTACGCCTCCTACAAGATCATTTCAACAGTCACAGGTTCCTATTGTTCCTAACACTACTAGGCATCATAGGCAAAATAGGGGCAGGATGAATTCAGTGGGAAAAGCTCACTCTGGTGTATATATCCCGCAACTGCAACACTATTATCAGCCAATGGACTCAAGAGTCGAGTACTTGGCAGGTTTGCTTCTTTTTCTTCACCCATTTGTACAGAAACTCAAATCACTCTTAGCCGCGAAGATTCCAGGAATGCTTGTGGAGATTGAGAATGGAGAATTGAGGCGTTTCCTGGAAGCAAGAGAAACTTCCTGCTTAAGTGGAAGTGGCAAGTGA 1635 0.433 MAVPATVAAAPASLYVGDLHPDISDTQLYQAFQEFKSLTSVRVCRDSMTRTSLRYGYVNFMSQQDAIRAIKVKNNSYLFGKVIRVMWSHRDPNARKSGRGNVFVKNLAESIDNAGLHDLFQKYGNVLSSKVVVYEDGKSKGYGFVQFESEESANYAIEKLNGSTVRDKQIYVGKFVRKGDRTLPGNDTKYTNLYIKNLDSDITEALLQEKFSSFGKVISLAIAKDANGLSKGFAFVNYDNPDDARKAMEAMNGLQFGSKNLYVARAQKKAEREQILHHQFEEKRKEQILKSKGSNLYVKNIDDGVSEKELRDLFSSCGTITSVKVMRNDKGISKGFGFVCFSNPEEANKAVSTFYGYMFHHKPLYIAIAQRKEDRKTQLKLNYAPQQAGLDGPSTAVIPGGFPPYFYPNVTSQMLQSGLLYRPLGLGSGWRANDFTPPTRSFQQSQVPIVPNTTRHHRQNRGRMNSVGKAHSGVYIPQLQHYYQPMDSRVEYLAGLLLFLHPFVQKLKSLLAAKIPGMLVEIENGELRRFLEARETSCLSGSGK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00582 544 PANTHER RNA BINDING PROTEIN 12 76 - -
Phco6g00582 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Phco6g00582 544 SMART rrm1_1 192 264 IPR000504 GO:0003723
Phco6g00582 544 SMART rrm1_1 295 367 IPR000504 GO:0003723
Phco6g00582 544 SMART rrm1_1 101 173 IPR000504 GO:0003723
Phco6g00582 544 SMART rrm1_1 13 86 IPR000504 GO:0003723
Phco6g00582 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Phco6g00582 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Phco6g00582 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Phco6g00582 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Phco6g00582 544 Coils Coil 263 283 - -
Phco6g00582 544 Gene3D - 5 100 IPR012677 -
Phco6g00582 544 FunFam Polyadenylate-binding protein 182 276 - -
Phco6g00582 544 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 390 IPR006515 GO:0003723
Phco6g00582 544 SMART rrm2_1 295 367 IPR003954 GO:0003676
Phco6g00582 544 SMART rrm2_1 192 264 IPR003954 GO:0003676
Phco6g00582 544 SMART rrm2_1 101 173 IPR003954 GO:0003676
Phco6g00582 544 SUPERFAMILY RNA-binding domain, RBD 190 374 IPR035979 GO:0003676
Phco6g00582 544 CDD RRM4_I_PABPs 293 371 - -
Phco6g00582 544 Gene3D - 182 277 IPR012677 -
Phco6g00582 544 Gene3D - 278 381 IPR012677 -
Phco6g00582 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Phco6g00582 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Phco6g00582 544 FunFam Polyadenylate-binding protein 4 99 - -
Phco6g00582 544 SUPERFAMILY PABC (PABP) domain 457 535 IPR036053 GO:0003723
Phco6g00582 544 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Phco6g00582 544 Gene3D - 101 181 IPR012677 -
Phco6g00582 544 CDD RRM2_I_PABPs 98 174 IPR045305 -
Phco6g00582 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Phco6g00582 544 FunFam Polyadenylate-binding protein 277 385 - -
Phco6g00582 544 FunFam Polyadenylate-binding protein 101 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00582 Phco-Chr6 5752057 5756160 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00582 6 5752057 5756160 Phco6g00582 6 5752057 5756160 ECH
Phco2g02108 2 51849260 51854421 Phco6g00582 6 5752057 5756160 PCT