Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02108 ATGCATGCGGAATCCTCCTACACTCACTCACTCTCACACACACCCCAACCTCTCTCTCTCTCTGTCCTTCGCCAATATCAAATCGTATCACACACTTTCCCTCTTCCTTCTTCTCTCACTCACATCACCACCAACGTTTCTTTGTTCCGTTCCAGAGAACGCGATAACAATCTTCAGCGGTTGCGCCTTCTCTTCCCTTCCTTACTCCTTCGCTCATCAGATTCATCCATGGCGGTTCCTCCGTCGGTTGCCGCCTCTCCGGCGTCGCTCTACGTCGGTGACCTCCATCCCGACGTCTCCGACAGTCACCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCACCTCCGTTCGCGTCTGCAAAGACTCCTCCACCGGCAAATCCCTCTGTTATGGCTACGTCAACTTCGTTTCTCCTCAGGACGCGATTCTTGCAATCGAGACTAAGAATCATACGTTGCTGAATGGAAAAATGATGAGGGTGATGTGGTCGCGTCGTGATCCTGATGCGAGGAAGAGCACTATTGGGAACTTGTTTGTCAAGTACATTCCTGAATCGATAGATAATGCTGGACTGCAAGATATATTCAAGAAATATGGGAATATTTTGTCCAGCAAAGTTGTCACCTATGACGATGGAAAGAGCAAAGGATACGGGTTTGTTCAATTTGAATCAGAGCAATCTTCACATGTTGCTATTGAGAAGCTGAATGGCTCTACTGTTGGTGATAAACAGTTATATGTTGGGAAGTTTGTTAAAAAAAGTGATCGCATTTTGCCTGGCGCGGATGCTAGATATACAAACTTGTACGTGAAGAATTTAGATTTGGATATTACAGAAGCAAAACTGAAGGAGAAGTTTTCCTCTTTTGGGAAAATTGTTAGCTTGGCTATTGCAAAGGACCACAATGGGATGCCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCCGATGATGCTAAAAAGGCAATGGAAGAAACGAATGGATCACAATTAGGTTCTAAGATTCTGTATGTAGCCAGAGCGCAAAAGAAAGCTGAGCGCGAGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAAGGAACAAATATTGAAATACAAGGGATCAAACGTTTATGTGAAAAACCTTGATGACAATATAAGTGACGAAGAACTGAGCGATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAGTTATGCAAGATGATAAAGGGATAAGTAAAGGATTTGGCTTTGTCTGCTTCTCCACTCCCGACGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTGTATGTTGCCCTTGCTCAGCGGAAAGAGGATAGGAAAGCACAATTGCAGCATCAATACACACAGCAAATAGCAGGAGTGGCCGGACCTTCGACTACCATTATCACTAGTGGATATCCTCCTTATTATTATGCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGCTGGGCTGATGTATCAACCTCTTGCATTGAGACCGGGATGGGGGCCTAATGGCTTTGCATCCCCTGCTAGATCATTTCAACAGTCATCTGTTCCTGCAGTTTCTAACAATAATAGGCAGCATAGGCAAAACAGGGGCAGGTTGAATGGGCATTCAGCATCACTGGGTAATACCAACTCTGGTACTTATTTGCAACAAGGCCAGCAGACTTCTCAGTCCATGATCTCTCCAAGAGAGTCAAGTACCCAGCAGAGAACTGGACAGCCTAAGTACATGCCCAGTGGACGCAAGCGTGACATGGAAAAAGGATCTGGTTCAAATTCTGGTAGAGGGTGCCAGGGGCCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGCTCCCGAGCAGCAAAAAGAGATGCTGGGAGAGCATCTTTACATGCTTGTTCAGAAACTAAAGCCTAGCCTAGCAGCAAAAATAACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGTTGGATCTCCTGGAATCGCCGGAGTCTCTTTCCGCAAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAATTCTAAGACGAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTACCTTTCAGCAGAAGTTGCAGTGAACTGA 2121 0.4559 MHAESSYTHSLSHTPQPLSLSVLRQYQIVSHTFPLPSSLTHITTNVSLFRSRERDNNLQRLRLLFPSLLLRSSDSSMAVPPSVAASPASLYVGDLHPDVSDSHLVDAFSEFKSLTSVRVCKDSSTGKSLCYGYVNFVSPQDAILAIETKNHTLLNGKMMRVMWSRRDPDARKSTIGNLFVKYIPESIDNAGLQDIFKKYGNILSSKVVTYDDGKSKGYGFVQFESEQSSHVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGADARYTNLYVKNLDLDITEAKLKEKFSSFGKIVSLAIAKDHNGMPKGFGFVNYDNPDDAKKAMEETNGSQLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNVYVKNLDDNISDEELSDHFSACGTITSAKVMQDDKGISKGFGFVCFSTPDEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQHQYTQQIAGVAGPSTTIITSGYPPYYYAATGVISHVPPRAGLMYQPLALRPGWGPNGFASPARSFQQSSVPAVSNNNRQHRQNRGRLNGHSASLGNTNSGTYLQQGQQTSQSMISPRESSTQQRTGQPKYMPSGRKRDMEKGSGSNSGRGCQGPEMLHSLLAGAAPEQQKEMLGEHLYMLVQKLKPSLAAKITGMLLEMDNGELLDLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNYLSAEVAVN 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02108 706 Gene3D - 608 687 - -
Phco2g02108 706 SMART rrm1_1 268 340 IPR000504 GO:0003723
Phco2g02108 706 SMART rrm1_1 371 443 IPR000504 GO:0003723
Phco2g02108 706 SMART rrm1_1 89 162 IPR000504 GO:0003723
Phco2g02108 706 SMART rrm1_1 177 249 IPR000504 GO:0003723
Phco2g02108 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Phco2g02108 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 447 IPR000504 GO:0003723
Phco2g02108 706 SMART poly_2 621 684 IPR002004 GO:0003723
Phco2g02108 706 Gene3D - 176 256 IPR012677 -
Phco2g02108 706 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 88 682 IPR006515 GO:0003723
Phco2g02108 706 FunFam Polyadenylate-binding protein 80 171 - -
Phco2g02108 706 SUPERFAMILY RNA-binding domain, RBD 88 255 IPR035979 GO:0003676
Phco2g02108 706 FunFam Polyadenylate-binding protein 353 461 - -
Phco2g02108 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 440 IPR000504 GO:0003723
Phco2g02108 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Phco2g02108 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 336 IPR000504 GO:0003723
Phco2g02108 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 246 IPR000504 GO:0003723
Phco2g02108 706 PANTHER RNA BINDING PROTEIN 78 150 - -
Phco2g02108 706 SUPERFAMILY PABC (PABP) domain 565 692 IPR036053 GO:0003723
Phco2g02108 706 FunFam Polyadenylate-binding protein 608 693 - -
Phco2g02108 706 FunFam Polyadenylate-binding protein 258 352 - -
Phco2g02108 706 CDD RRM4_I_PABPs 369 447 - -
Phco2g02108 706 Coils Coil 339 359 - -
Phco2g02108 706 MobiDBLite consensus disorder prediction 514 611 - -
Phco2g02108 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 344 IPR000504 GO:0003723
Phco2g02108 706 Gene3D - 257 362 IPR012677 -
Phco2g02108 706 SUPERFAMILY RNA-binding domain, RBD 367 459 IPR035979 GO:0003676
Phco2g02108 706 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 609 686 IPR002004 GO:0003723
Phco2g02108 706 MobiDBLite consensus disorder prediction 516 585 - -
Phco2g02108 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Phco2g02108 706 Gene3D - 51 174 IPR012677 -
Phco2g02108 706 FunFam Poly(A) binding protein cytoplasmic 1 like 172 257 - -
Phco2g02108 706 Pfam Poly-adenylate binding protein, unique domain 617 681 IPR002004 GO:0003723
Phco2g02108 706 SUPERFAMILY RNA-binding domain, RBD 260 351 IPR035979 GO:0003676
Phco2g02108 706 Gene3D - 366 465 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02108 Phco-Chr2 51849260 51854421 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02108 2 51849260 51854421 Phco2g02108 2 51849260 51854421 ECH
Phco2g02108 2 51849260 51854421 Phco6g00582 6 5752057 5756160 PCT