Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00580 ATGCGGTGTTGCATTCCTACGCTGTTGGCGATGACCGCCGTGCTGGTGTCGGCGGCGCACGCCGCTTTCCTCTCTCTGGAGCGGAGCATTCCTCTGAGCCACCGCCAGGAGGTGGCGGCGCTGAGGGCTCGCGACAGAGCCCGCCACGCCCGAATGTTGAGCGGCATAGTCGACTTAGCAGTCCAAGGAACCTCCGATCCAAACTCCGTTGGGTACGGGTTGTATTATACCAAAGTGAAGATGGGAACACCTGCTAAAGAATTTAACGTGCAGATTGATACGGGGAGTGATATATTGTGGGTGAATTGCAATACTTGCAGTAATTGTCCTCAGTCTAGTGAACTAGGGATTGAGCTTAATTTCTTTGACACGGTTGGGTCGTCCACCGCTGCGTTGGTTCCCTGCTCGGACCCGATATGCACTACTGGCGTTCAAGGTGCTTCTGCTGAGTGCTCCACGAGGGTAAATCAATGCAGCTACGCCTTTACGTATGGAGATGGGAGTGGGACTTCAGGTTATTATGTTTCGGATGCATTGTATTTTAACTTGATCGTGGGACAGCCTCCACTTCCACCGGTTAACTCTTCGGCTACCATTGTTTTTGGGTGTAGTATCTATCAGTCTGGAGATCTGACTAAAGCAGATAAAGCAGTTGATGGCATTTTCGGGTTTGGCCCTGGTGCTCTTTCTGTTGTATCGCAGTTGTCATCACGAGGACTAACACCCAAAGTCTTCTCTCATTGCTTAAAAGGAGATGGTGATGGAGGAGGCATTCTAGTTCTTGGCGAGATAAAGGAGTCAAGTATTGTTTATAGTCCACTTGTTCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGGCAACTCCTCCCAATTAATCCAGCTGTATTTGCAACATCTAATGACCGAGGAACTATAGTTGACTGTGGTACAACATTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTCAATGCAATAACTACTGCTGTGTCACAATCTGCTCAGCAAATTAATTCCAAAGGAAACCAGTGTTATCTGGTCTCAACCAGTATAGGGGACATTTTTCCTTCGGTCAGTTTAAATTTTGAGGGTGGAGCGTCCATGGTTTTAAAACCAGAGCAGTACCTTATGCATAATGGTTACCGTGATGGAGCTGAAATGTGGTGCATTGGTTTCCAGAATGTACAGGAGGGAGTCTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATCGTTGTGTATGACTTGGCACATCAACGAATTGGATGGGCTAACTATGACTGTTCTTTGTCGGTAAATGTGTCTGTGACTACGAGCAAGGATGAATACATCAATGGGGGACAGCTGAGTGTCAACAGCTCCGCAAAACGCTTTTTTTGTAATTTACTACCCGTAAGCATTGTGGCTCTCTCTTTGTACATAATGTTAGTATGA 1455 0.4632 MRCCIPTLLAMTAVLVSAAHAAFLSLERSIPLSHRQEVAALRARDRARHARMLSGIVDLAVQGTSDPNSVGYGLYYTKVKMGTPAKEFNVQIDTGSDILWVNCNTCSNCPQSSELGIELNFFDTVGSSTAALVPCSDPICTTGVQGASAECSTRVNQCSYAFTYGDGSGTSGYYVSDALYFNLIVGQPPLPPVNSSATIVFGCSIYQSGDLTKADKAVDGIFGFGPGALSVVSQLSSRGLTPKVFSHCLKGDGDGGGILVLGEIKESSIVYSPLVPSQPHYNLNLQSIAVNGQLLPINPAVFATSNDRGTIVDCGTTLAYLVQEAYDPLVNAITTAVSQSAQQINSKGNQCYLVSTSIGDIFPSVSLNFEGGASMVLKPEQYLMHNGYRDGAEMWCIGFQNVQEGVSILGDLVLKDKIVVYDLAHQRIGWANYDCSLSVNVSVTTSKDEYINGGQLSVNSSAKRFFCNLLPVSIVALSLYIMLV 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00580 484 Gene3D Acid Proteases 264 442 IPR021109 -
Phco6g00580 484 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Phco6g00580 484 PRINTS Pepsin (A1) aspartic protease family signature 407 422 IPR001461 GO:0004190|GO:0006508
Phco6g00580 484 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Phco6g00580 484 Pfam Xylanase inhibitor C-terminal 280 431 IPR032799 -
Phco6g00580 484 Pfam Xylanase inhibitor N-terminal 75 262 IPR032861 -
Phco6g00580 484 ProSiteProfiles Peptidase family A1 domain profile. 75 431 IPR033121 -
Phco6g00580 484 CDD pepsin_A_like_plant 75 435 IPR034161 -
Phco6g00580 484 FunFam Aspartic proteinase-like protein 2 56 263 - -
Phco6g00580 484 FunFam Aspartic proteinase-like protein 2 264 442 - -
Phco6g00580 484 PANTHER ASPARTYL PROTEASES 9 429 IPR001461 GO:0004190|GO:0006508
Phco6g00580 484 Gene3D Acid Proteases 57 263 IPR021109 -
Phco6g00580 484 SUPERFAMILY Acid proteases 70 438 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00580 Phco-Chr6 5734863 5739499 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00580 6 5734863 5739499 Phco6g00580 6 5734863 5739499 ECH
Phco2g02107 2 51841677 51847321 Phco6g00580 6 5734863 5739499 PCT