Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02107 ATGCGGGTCTGTGTTTCCCTGTCGCTCGCGTTAGCCACCGTCGCGTTGGCGGCGACGATGGTGGACGGCGGTTTGGCGGGGACATTTCTTCCTCTGGAACGGGCCATTCCTCTGAACCAACGAGTGGAGTTAGAGGTGCTGAGAGCTCGCGACAGAGAACGCCACGGTCGAATCTTGCAAGGTGTCTTTGGTGGCGTTGTCGACTTCGCGGTCCAAGGAACCTCCGATCCTTACTTCGTTGGGTACGGGCTGTATTTCACGAAAGTGAAGTTGGGATCTCCTGCAAAAGAGTTTTACGTTCAGATTGATACCGGAAGTGACGTATTGTGGCTGAATTGCATGACTTGCAGTAATTGCCCGCAATCTAGTGGGCTAGGGATTGTGCTGGATTTCTTTGACACGGCCGGCTCATCCACTGCTGCGTTTATTTCCTGCGCTGATCCAATATGTTCTTATGCTGTTCAAACTGCGACAAGTGAATGCTCTTCTCAGGCTAATCATTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACAACTGGTTATTATGTTTCTGATACGATGTATTTTGACACAGTCCTGGGACAGTCATTGGTTTCTAACTCTTCATCTACCATCGTTTTTGGGTGTAGCACCTACCAGTCTGGGGATTTGACCAAAACAGACAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTATATCACAATTGTCATCACAGGGTGTGACACCCAAAGTGTTCTCTCATTGCCTAAAAGGAGCAGACAATGGAGGAGGTGTGCTAGTTCTCGGTCAAATTTTGGAGCCAAGTATTATTTATAGCCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTGAATGGACAACTTCTCCCAATTGATTCAGGTGTATTTGCAACAACTAATAATCGAGGAACTATAGTTGACACTGGAACAACATTGGCATACCTTGTTCAAGAAGCATACAATCCTTTTGTCGATGCTATAACTGCTGCCGTGTCACAGTTCTCCAAACCCATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCAAACAGTGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTCATGGGTGGGGCATCTATGGTTTTAGATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATGCTGCTGCAATGTGGTGCATTGGCTTCCAAAAAGGGGAGCAGGGATTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATATGACTTAGCTAATCAACGAATTGGATGGGCGAATTATGACTGCTCCTTGGCTGTAAACGTCTCTATGGCTACGAGCAAGAGCAAGGATGCATACATAAACAATTCAGGACACGTCAGTGAGGGATGCTCCCACATAGGCACTTTCTCCAAGTTGCTAGCAGCAGGCATTGCTGCTTTCCTTGTGCACATAGTTTTCATGGAGTTCCCATTTTTGTAA 1503 0.4544 MRVCVSLSLALATVALAATMVDGGLAGTFLPLERAIPLNQRVELEVLRARDRERHGRILQGVFGGVVDFAVQGTSDPYFVGYGLYFTKVKLGSPAKEFYVQIDTGSDVLWLNCMTCSNCPQSSGLGIVLDFFDTAGSSTAAFISCADPICSYAVQTATSECSSQANHCSYTFQYGDGSGTTGYYVSDTMYFDTVLGQSLVSNSSSTIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSQGVTPKVFSHCLKGADNGGGVLVLGQILEPSIIYSPLVPSQPHYNLNLQSIAVNGQLLPIDSGVFATTNNRGTIVDTGTTLAYLVQEAYNPFVDAITAAVSQFSKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMVLDPEHYLMHYGFLDAAAMWCIGFQKGEQGFTILGDLVLKDKIFVYDLANQRIGWANYDCSLAVNVSMATSKSKDAYINNSGHVSEGCSHIGTFSKLLAAGIAAFLVHIVFMEFPFL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02107 500 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Phco2g02107 500 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Phco2g02107 500 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Phco2g02107 500 CDD pepsin_A_like_plant 85 443 IPR034161 -
Phco2g02107 500 ProSiteProfiles Peptidase family A1 domain profile. 85 439 IPR033121 -
Phco2g02107 500 FunFam Aspartic proteinase-like protein 2 272 450 - -
Phco2g02107 500 Pfam Xylanase inhibitor N-terminal 85 271 IPR032861 -
Phco2g02107 500 SUPERFAMILY Acid proteases 80 445 IPR021109 -
Phco2g02107 500 Pfam Xylanase inhibitor C-terminal 288 439 IPR032799 -
Phco2g02107 500 FunFam Aspartic proteinase-like protein 2 66 271 - -
Phco2g02107 500 PANTHER ASPARTYL PROTEASES 21 437 IPR001461 GO:0004190|GO:0006508
Phco2g02107 500 Gene3D Acid Proteases 68 271 IPR021109 -
Phco2g02107 500 Gene3D Acid Proteases 272 449 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02107 Phco-Chr2 51841677 51847321 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02107 2 51841677 51847321 Phco2g02107 2 51841677 51847321 ECH
Phco2g02107 2 51841677 51847321 Phco6g00580 6 5734863 5739499 PCT