Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00525 ATGGCTGCAACTGCTGCAGGCATAGCTTCGTTGTTTTCTTCTTCCATTAACAGCGTCAGATGTCTTCGTTCCAAGCACTGCTCCATGATGGATCCCCTTATGACAGCAATGCTGTCAAACCGCATGTTTGCTCCTGTGTCACACTTGGTGGTGGAACCTTTGCCCATCGGAGGTACCATATCGCATAGGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGTGGTTGTTGTGGATGATGCTGGTTTGGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGGGAAGTGGTGGCAGAACAAGACTCAGATGAATCCTTTGCTAGCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGACTATGGTAGTGCAGAACTAATTGAGGTTCTTTACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGACTGTAATGCAGTAATAGAAAATCTTGACGGAAAAGAATACCTGGGCAGAACCTTGAGGGTGAACTTCTCTAACAAACCAAAAGCAAAGGAACCCTTGTACCCTGAAACTGAACATAAGCTCTTTGTTGGGAATCTGTCATGGTCAGTAACTAATGAGATTTTGACACAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTATATGATGGAGAAACTGGAAGGTCACGTGGCTATGGCTTTGTTTGCTTTTCAACAAAAGAAGAGATGGAATCTGCCCTTGGAGCCTTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTGAGTTTGGCTGAAGGAAAACGTGCACAAGGCTAA 861 0.4483 MAATAAGIASLFSSSINSVRCLRSKHCSMMDPLMTAMLSNRMFAPVSHLVVEPLPIGGTISHRLWGPRISAAVAQEEVVVVDDAGLVEEEKVEENEGEVVAEQDSDESFASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEYLGRTLRVNFSNKPKAKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMESALGALNDVELEGRAMRVSLAEGKRAQG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00525 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Phco6g00525 286 Gene3D - 194 286 IPR012677 -
Phco6g00525 286 SMART rrm1_1 204 277 IPR000504 GO:0003723
Phco6g00525 286 SMART rrm1_1 113 186 IPR000504 GO:0003723
Phco6g00525 286 FunFam 28 kDa ribonucleoprotein, chloroplastic 194 285 - -
Phco6g00525 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 274 IPR000504 GO:0003723
Phco6g00525 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Phco6g00525 286 FunFam 31 kDa ribonucleoprotein, chloroplastic 74 193 - -
Phco6g00525 286 SUPERFAMILY RNA-binding domain, RBD 106 193 IPR035979 GO:0003676
Phco6g00525 286 PANTHER OS02G0815200 PROTEIN 72 283 - -
Phco6g00525 286 Gene3D - 74 193 IPR012677 -
Phco6g00525 286 SUPERFAMILY RNA-binding domain, RBD 197 283 IPR035979 GO:0003676
Phco6g00525 286 CDD RRM2_NsCP33_like 204 279 - -
Phco6g00525 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00525 Phco-Chr6 5114761 5117290 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02264 2 53274111 53277109 Phco6g00525 6 5114761 5117290 PCT