Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02264 ATGGCTGCTGCAGCTTCTTTTTCCTCCTCTATCTGCAACAGAATATACAATCTTTCCCTCACCCACTCTTCCGTTTCACTCACCTCCAACTTCCTTCAGAGACCCATTTTCCAAAAACAACTCAATCTTAACCTCAAGTCCCAAAGCTTCAGTCTTTCATTTCTCACACTTCATCGTCTGTCCCCACCTTCCGCCACCTTCGATGGGCTGGAAGTGGGTCTAGACATAACAGAGTCCCGACAAGACGAACCAGTAACAGAAACCTCTGAAAAAACAGAACAAGAGGAAGAGCGAAAGGTTTCAGACTACGATAACGATGCTGGGAGGCTCTACATTGGAAACTTGCCATTTTCAATTACTAATTCCCAATTGGCAGAGCTCTTTGGAGAAGCTGGCACCGTGGCGTCTGTTGAGATTGTGTATGATCGTGTCACGGGTAGAAGCAGGGGATTTGCATTTGTTACAATGGAGAGTGTAGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCTAAGGTAAACTTCCCAGAGGTACCCAAAGGAGGGGAAAGACTGGTAATGGGTGCAAAAGTAAGGAACAACTACAGAGGCTTTGTAGACAGCCCTTACAAGATCTATTGTGGAAACCTTGGCTGGGGAGTCAACTCACAGGGTCTTAGAGAAGCTTTTGCTGAGCAGCCAGGCATATTGAGTGCCAAGGTCGTCTATGAGAAGGACAGTGGAAGATCTCGAGGTTTCGGGTTTGTTTCTTTTACAACTGCCGAGTCTGCAGCAGCTGCCTTGGACTTTATGAATGGTGTGGAAGTACAAGGTCGCCCATTGCGGTTGAATATAGCTGAAACAAGGACACCACCATCTCCTCCAGTAATTGAGGAAAATGCAGGAAGCAATGCTGAAAGCTCGGAATTGGTCTCAAGTGCCAGAACATAA 954 0.4654 MAAAASFSSSICNRIYNLSLTHSSVSLTSNFLQRPIFQKQLNLNLKSQSFSLSFLTLHRLSPPSATFDGLEVGLDITESRQDEPVTETSEKTEQEEERKVSDYDNDAGRLYIGNLPFSITNSQLAELFGEAGTVASVEIVYDRVTGRSRGFAFVTMESVEDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMGAKVRNNYRGFVDSPYKIYCGNLGWGVNSQGLREAFAEQPGILSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDFMNGVEVQGRPLRLNIAETRTPPSPPVIEENAGSNAESSELVSSART 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02264 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Phco2g02264 317 MobiDBLite consensus disorder prediction 78 102 - -
Phco2g02264 317 SUPERFAMILY RNA-binding domain, RBD 208 294 IPR035979 GO:0003676
Phco2g02264 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Phco2g02264 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 283 IPR000504 GO:0003723
Phco2g02264 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Phco2g02264 317 CDD RRM2_NsCP33_like 212 287 - -
Phco2g02264 317 MobiDBLite consensus disorder prediction 287 317 - -
Phco2g02264 317 SMART rrm1_1 212 285 IPR000504 GO:0003723
Phco2g02264 317 SMART rrm1_1 109 182 IPR000504 GO:0003723
Phco2g02264 317 MobiDBLite consensus disorder prediction 301 317 - -
Phco2g02264 317 SUPERFAMILY RNA-binding domain, RBD 102 185 IPR035979 GO:0003676
Phco2g02264 317 Gene3D - 197 294 IPR012677 -
Phco2g02264 317 Gene3D - 73 191 IPR012677 -
Phco2g02264 317 PANTHER OS02G0815200 PROTEIN 46 291 - -
Phco2g02264 317 CDD RRM1_PSRP2_like 109 188 - -
Phco2g02264 317 FunFam 33 kDa ribonucleoprotein, chloroplastic 193 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02264 Phco-Chr2 53274111 53277109 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02264 2 53274111 53277109 Phco6g00525 6 5114761 5117290 PCT