LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco6g00491	ATGAGAGCAGGAGTTTGCAGCATACAGCTACAGGCTTTGACACCAGAAGCTGCAACCCTAGTTAAGCAAGCTGTTACTCTTGCCACAAGAAGAGGACATGCTCAAGTGACCCCTCTTCATATTGCTACTGTCATGCTTGCTACTTCCACTGGCCTTCTCCGCAAAGCTTGCCTTCAATGCCACTCTCACCCTCTCCAATATAAGGCATTAGAACTTTGCTTCAATGTTTCCCTCAACCGTTTGCCAGCCTCCACTCCAAGCCCTCTTTTGAGTCCTTCATATTCCACCACTCCCTCACTCTCCAATGCCTTGGTTGCAGCCTTCAAGCGAGCTCAAGCTCACCAACGCCGTGGGTCCACTGAGAACCAGCAGCAGCCCATTTTGGCCTTGAAGATTGAGGTGGAGCAGCTCATAGTCTCTATCCTTGATGACCCAAGTATTAGCAGGGTCATGAGAGAAGCTGGTTTCTCTAGTGCCCTCGTTAAAACCAGGGTTGAACAAGCTGTTTCAATGGAAGTTTGTTCACAAGAACAAGCTTCCGAGGAAAACACCACCAAGCTTCAAGTTCTTGGTGGTAGGAACATGTCCCCACCAAGATCTTTTAGTCAATTTGGGGGCTCATTCATCAAATCTATGGACCATGTTAGTGATGAAGTTGCTGGTGTAGATGATGTAACTAGTGCTTTGAATGCACTTGTGAGCAAGAGGAGAAACACAGTAATTGTTGGGGAGAGTCTTGCTAGTGCTGAGGGAGTAGCTAGGGGAGTGATGCAAAGGTTGGAGAGAGGGAATCCTCAAGGAGAGTTGAGGTTTGTGCAATTTGTGAGTCTTCCTCTTTTCTCCTTCAGGAACATTAGCAAGGAGGAGGTTGAAAGGAAGCTTCTAGAGCTTAGAAGCCTAGTAAAAAGTCACGTTGGAAGAGGGTTTATTCTATACTTGGGTGATCTCAAGTGGTTGTTTGAGTTCTGGTCAAGTTATTGTGAGCAAAGAACAAACTATTACAGTTCTGTGGAGCATATGGTGATGGAGCTCAAAAAACTAATTAGTGGAAATGGTGAGAATGGTAGATTGTGGCTTATGGGGATATCAACTTTTAGAACATACATGAAGGGCAAAGCATGTCACCCTTCTCTTGAAACTATTTGGGATCTTCACCCTTTTACCGTTCCAGTTGGTAGCCTCAGCCTGGGTTTAAATTTTGATAGTGATTTTCATGTTCAAGAGAGAAGCAAGGCAACATTCAAGGACGAATCTTTTGAAGAACGGGCCAAAGTGCGCAAACATTTAACTTGCTGCAGAGACTGCGCGTTGAATTTTGAAAAAGAAGCTAAAAGCATCGCCAGTACTATAAGCAAGAGAGATTGCGCTACCAGCTTGCCAACATGGCTCAAAAATTGCAAGGAAGAGAGAAGTCACGTGATGGATGATCAGGAAAATGCTAAGCTTAAGGATATCTGCAAGAAATGGAACTCATTTTGCTGTTCAGCACATGGTTATCCCTCCAATCTTGAGAAACAATTTTTGTTCATTTCATCCTCACCTTCATCCCCTACTTCAATCTCTTCACATGAAAGAAAGTCTAGCTTGAATCTTACCCACCTAAATTGGCCAGTCATTTCTGAACCAAAAGAAGTACCTAAAGAATGTGAGTTATACACTGAGACTACTGTTAGTGATGAGTGTTATGAAGGAAACTTGATAATGTTCATGCCAGAGAGAAACATCCCTAAGCCAGATCTTTTGTCTAATCCAAATTCTAGCCCCAATTCTGCTTCTTCGAGTGAGGCAGCGGAAGGTTTGGACAGCACTCAAATGTTCAAGGAGCATAATGACGAGAATCTAATGATTCTCAGTGATGCATTGCAGAAAAAGGTTCCACAAAATAAAGAAATGGCTAAGGATATTTCTAGCGCTTTGCTTCTTTGCAGGTCAGGAATGAAAAAAGGAGAGAATCACTTAGTGAAGAGAGAAGATAGACAAGAAACTTGGTTTTTCTTTCTAGGTATGGATTCTCCAGCGAAAGAAATGGTCTCAAAAGAGCTAGCTAAAGTTGTCTTTGGCTCTTACAGTAACTTTGTCTCCATTGGTGTAAGCAGTTTCTCGACCTCAAGAGGTGGTGATTCCACGAATGAGGCGTCCAAAAATAAAAGACCAAGAGATGAGTTTGGTGGCAGTTATCTTCAGAGATTTGGGGAAGCTGTGAATGAGAATCCTCATAGGGTGTTCTTCATGGAAGATTTGGAGCAAGTTGATCACTTTTCAAAAAAGGGTGTTAAGAAAGCAATTGAAAATGGAACTATAACCCTTCCCGGGGGTGAATCTGTGCCTCTCAAGGATGCCGTTGTCATTTTCAGCTGCGAAAACTTTAGTTCAGTGTCAAAAGCCTCTTCTCCTGCAAGAACTACTTCTCCATCTTCTGATGAAAACATGGAGAAAGAGAATATTAATAACTCAGAAGAGAAAATTCCATACCTTTCTTTGGATCTGAACATGGCCATTGAAGCTGATGCCCAGAAAAATATGCATTTAGATGAAGTCACTGCTGAGATCCTGGAGTTAGTTGACAAGCAAATTAAGTTTCAAGTATGA	2589	0.426	MRAGVCSIQLQALTPEAATLVKQAVTLATRRGHAQVTPLHIATVMLATSTGLLRKACLQCHSHPLQYKALELCFNVSLNRLPASTPSPLLSPSYSTTPSLSNALVAAFKRAQAHQRRGSTENQQQPILALKIEVEQLIVSILDDPSISRVMREAGFSSALVKTRVEQAVSMEVCSQEQASEENTTKLQVLGGRNMSPPRSFSQFGGSFIKSMDHVSDEVAGVDDVTSALNALVSKRRNTVIVGESLASAEGVARGVMQRLERGNPQGELRFVQFVSLPLFSFRNISKEEVERKLLELRSLVKSHVGRGFILYLGDLKWLFEFWSSYCEQRTNYYSSVEHMVMELKKLISGNGENGRLWLMGISTFRTYMKGKACHPSLETIWDLHPFTVPVGSLSLGLNFDSDFHVQERSKATFKDESFEERAKVRKHLTCCRDCALNFEKEAKSIASTISKRDCATSLPTWLKNCKEERSHVMDDQENAKLKDICKKWNSFCCSAHGYPSNLEKQFLFISSSPSSPTSISSHERKSSLNLTHLNWPVISEPKEVPKECELYTETTVSDECYEGNLIMFMPERNIPKPDLLSNPNSSPNSASSSEAAEGLDSTQMFKEHNDENLMILSDALQKKVPQNKEMAKDISSALLLCRSGMKKGENHLVKREDRQETWFFFLGMDSPAKEMVSKELAKVVFGSYSNFVSIGVSSFSTSRGGDSTNEASKNKRPRDEFGGSYLQRFGEAVNENPHRVFFMEDLEQVDHFSKKGVKKAIENGTITLPGGESVPLKDAVVIFSCENFSSVSKASSPARTTSPSSDENMEKENINNSEEKIPYLSLDLNMAIEADAQKNMHLDEVTAEILELVDKQIKFQV	862

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco6g00491	862	MobiDBLite	consensus disorder prediction	794	817	-	-
	Phco6g00491	862	Pfam	Clp amino terminal domain, pathogenicity island component	132	169	IPR004176	-
	Phco6g00491	862	Pfam	Clp amino terminal domain, pathogenicity island component	24	55	IPR004176	-
	Phco6g00491	862	MobiDBLite	consensus disorder prediction	577	601	-	-
	Phco6g00491	862	Gene3D	-	592	860	IPR027417	-
	Phco6g00491	862	PANTHER	CHAPERONE PROTEIN CLPD, CHLOROPLASTIC	1	861	-	-
	Phco6g00491	862	MobiDBLite	consensus disorder prediction	794	811	-	-
	Phco6g00491	862	SUPERFAMILY	Double Clp-N motif	13	165	IPR036628	-
	Phco6g00491	862	MobiDBLite	consensus disorder prediction	579	600	-	-
	Phco6g00491	862	ProSiteProfiles	Clp repeat (R) domain profile.	10	172	IPR004176	-
	Phco6g00491	862	Gene3D	-	9	171	IPR036628	-
	Phco6g00491	862	MobiDBLite	consensus disorder prediction	700	721	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco6g00491	Phco-Chr6	4707821	4710643	Transposed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco6g00491	6	4707821	4710643	Phco6g00491	6	4707821	4710643	ECH
	Phco6g00491	6	4707821	4710643	Phco3g00927	3	7757835	7762716	ECH