Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00426 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGGCAACATCTCTTAGGTGAAAACATCTCAAACTCCTTTTTCTCCAACCTCAATCCTGTCAAGCTTGAAGCCCCTTCATCACCAGAGTTTGATTTCAGCTCATATATTTCAGAAAACAACAGTTTCTTCACTTTCCTTGAAAGGTATGACTTGGTGGCAGACATGGAGTTTGTGGATCACAAGGCCATGAATTCCACATCAACAGCAACCATCCCCATCCCCTCTAAGGAACCAAAGAAATGCAATTCTCCTGAACCAATGGTATCATCAGAAGAGAAGGCAAAGAAGGCAGAATATGATGAGGCAAGACGTTATAGGGGAGTTAGAAGAAGGCCTTGGGGTAAGTTTGCTGCTGAAATCCGTGACCCTACTAGGAAAGGGACAAGGGTTTGGCTTGGCACTTTTGAGTCTGAAATTGATGCTGCTAAGGCCTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAGGCCATTCTGAACTTTCCTCTTGAGGCTGGAGAGTCTGATCCAAAGCCAAACAGTTGTGGCAGGAAAAGAAGAAGAGAGAGCCTTGAATTGGAGCTGCCACAGGTCCAAGTTCATCATGGTGTATCATGA 636 0.445 MTTAEETSNLDLIRQHLLGENISNSFFSNLNPVKLEAPSSPEFDFSSYISENNSFFTFLERYDLVADMEFVDHKAMNSTSTATIPIPSKEPKKCNSPEPMVSSEEKAKKAEYDEARRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFESEIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNSCGRKRRRESLELELPQVQVHHGVS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00426 211 FunFam Ethylene-responsive transcription factor 2 116 177 - -
Phco6g00426 211 Gene3D AP2/ERF domain 116 177 IPR036955 GO:0003700|GO:0006355
Phco6g00426 211 MobiDBLite consensus disorder prediction 176 211 - -
Phco6g00426 211 PANTHER DNA-BINDING DOMAIN 83 184 IPR044808 GO:0003700|GO:0009873
Phco6g00426 211 CDD AP2 125 175 IPR001471 GO:0003700|GO:0006355
Phco6g00426 211 SUPERFAMILY DNA-binding domain 117 176 IPR016177 GO:0003677
Phco6g00426 211 ProSiteProfiles AP2/ERF domain profile. 117 175 IPR001471 GO:0003700|GO:0006355
Phco6g00426 211 SMART rav1_2 117 181 IPR001471 GO:0003700|GO:0006355
Phco6g00426 211 MobiDBLite consensus disorder prediction 184 201 - -
Phco6g00426 211 Pfam AP2 domain 117 167 IPR001471 GO:0003700|GO:0006355
Phco6g00426 211 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Phco6g00426 211 PRINTS Ethylene responsive element binding protein signature 157 177 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00426 Phco-Chr6 3996386 3997021 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g00426 AP2 5e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00426 6 3996386 3997021 Phco6g00426 6 3996386 3997021 ECH
Phco2g01783 2 48384493 48387645 Phco6g00426 6 3996386 3997021 PCT