Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00421 ATGTCTCAGTCATGTGTTATGATTGCAGCATCACTGTTATTTGTTATAGCACAAAGTGTTGTGGGAGTGAATTCAGTTTCACAAGCTGATAAGATAACCACTTTGCCAGGGCAGCCACCAGTCAAGTTCCAGCAATATGCTGGTTATATTACAGTGGATGAGAAGCAGAAGAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAGTGGAACCAGCTTCAAAGCCACTAGTTCTATGGTTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTTGAGCATGGCCCTTTCAAACCAAGTGAAAATGGTCTTCTGAAAAATGAATTTAGTTGGAACAAAGAGGCAAATATGCTGTACTTGGAATCACCAGCTGGTGTTGGTTTCTCCTACTCTGCCAACAAATCTTTCTATGACTATGTGAATGATGAAATGACAGCAAGGGACAATCTTGTTTTCCTACAGCGATGGTTCACTAGATTCCCAGAGTTCAAGAACAGTGATTTCTTTATCACAGGGGAAAGCTATGCAGGTCACTATGTACCCCAACTTGCACAACTCATTGTTCAAACCAAGACCAAGTTCAATCTCAAGGGAATAGCACTAGGGAATCCTCTTCTAGAATTTAACACGGATTTCAACTCTAGAGCTGAGTTTTTCTGGTCTCATGGCCTAATATCAGATTCAACTTACGAAATCTTCACCAAAGTATGCAACTATTCCCAAATTAGGAGACAACATCAAAGTGGGACACTTACCCCCATTTGTTCAGGAGTAAATAAGCTAGTGTCAACGGAAGTTAGTAGATATGTTGATACATATGATGTTACACTTGATGTGTGTCTTTCATCAGTAGATCAACAGGCTTATGTGCTGAATCAACTCTCTCAACTGCAAGAAGGAGGAAAGATAGATGTTTGTGTGGAAGATGAAACTACCGCATATTTGAATAGGAAAGACGTGCAGGAAGCTCTCCATGCTAAGCTCGAAGGGATCACTTCGTGGTCAGTTTGCAGCGATACTCTTGAATATGACTTGAAGAACCTAGAGATTCCAACTATTTCTATCCTTGGTGCACTTGCTAAGTCTGGTATCAGGGTTCTGGTATACAGTGGAGATCAAGATTCAGTTATCCCATTAATTGGGACAAGATCCCTGGTAAATGGATTGGCCAAGGACTTTGGACTTAACAGAACAGTGTCCTATAGAACCTGGTTTGAAGGAAGACAGGTGGCTGGTTGGACACAAGTATATGGAGACATCTTATCATTTGCCACCGTAAGAGGAGCTGCTCATGAAGCTCCATTTTCCCAGCCAGAGAGGTCACTGGTGCTACTGAAAGCATTTTTGGAAGGAAAACCACTTCCAGAACCATTCTTTCAAATATGA 1395 0.4158 MSQSCVMIAASLLFVIAQSVVGVNSVSQADKITTLPGQPPVKFQQYAGYITVDEKQKRALFYYFVEAEVEPASKPLVLWLNGGPGCSSVGAGAFVEHGPFKPSENGLLKNEFSWNKEANMLYLESPAGVGFSYSANKSFYDYVNDEMTARDNLVFLQRWFTRFPEFKNSDFFITGESYAGHYVPQLAQLIVQTKTKFNLKGIALGNPLLEFNTDFNSRAEFFWSHGLISDSTYEIFTKVCNYSQIRRQHQSGTLTPICSGVNKLVSTEVSRYVDTYDVTLDVCLSSVDQQAYVLNQLSQLQEGGKIDVCVEDETTAYLNRKDVQEALHAKLEGITSWSVCSDTLEYDLKNLEIPTISILGALAKSGIRVLVYSGDQDSVIPLIGTRSLVNGLAKDFGLNRTVSYRTWFEGRQVAGWTQVYGDILSFATVRGAAHEAPFSQPERSLVLLKAFLEGKPLPEPFFQI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00421 464 FunFam Carboxypeptidase 355 454 - -
Phco6g00421 464 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 441 IPR001563 GO:0004185|GO:0006508
Phco6g00421 464 Pfam Serine carboxypeptidase 36 454 IPR001563 GO:0004185|GO:0006508
Phco6g00421 464 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Phco6g00421 464 Gene3D alpha/beta hydrolase 26 284 IPR029058 -
Phco6g00421 464 SUPERFAMILY alpha/beta-Hydrolases 23 460 IPR029058 -
Phco6g00421 464 FunFam Carboxypeptidase 25 458 - -
Phco6g00421 464 Gene3D - 309 344 - -
Phco6g00421 464 Gene3D - 356 454 - -
Phco6g00421 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Phco6g00421 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Phco6g00421 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Phco6g00421 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00421 Phco-Chr6 3958086 3961224 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00421 6 3958086 3961224 Phco9g00933 9 7557226 7560078 ECH
Phco6g00421 6 3958086 3961224 Phco6g00421 6 3958086 3961224 ECH