Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00286 ATGGCCCTCCCAAGACACCACCTCTTGTTCCTTGTTGCCATCATCATGCTTTCTTTTGCTGATAGCACAGTTCCAGAGGACCCACTTCTGTTATTTCATGAGGCTTCTTCTAAAGACAACAACTTCATCATGCAAAGTACACATGTTTTGAACTTGAAGAGTTTTGACAAATTGGGTCAGATTTCTTCTTCCCCTAAAATGGTTAACGTCAATGATTATGGGGCTCGAGGAGATGGGAAAAGTGATGACACTCTGGCATTCAAGAAGGCTTGGGAAGAAACATGTTCATCTGGGAGAGCAGTTTTTGTGGTGCCACAGAAGAATTATCTACTCAAGCCAATCACATTTTCTGGCCCTTGCAAATCCAACATCGCAGTTCAGATCACTGGAACCCTTGAAGCATCAGATAACCTATCAGATTACAGCAAAGACCGCGCACACTGGCTTATGTTCGACAGTGTTCAGAAACTATCAGTTAAAGGTGGTGGAACCATCGATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACCAAAAGCTTCCTTGCAAGAAGGCCCCTACGGCGTTGACTTTCTACAAGTGCAACGACATAACAGTTGAGGATTTGACGATAAAAAATGGTCAACAGATGCATGTTTCATTCGAAGAATCTGAGAATGTTATAGTTTCTGGTCTCACCGTGACAGCACCTGAGGATAGCCCAAACACTGATGGAATTCACATCACAAACACTCAAAACATTCAAATCTTAAATACAGTTATAGGAACTGGTGATGATTGTATATCAATAGAAAGTGGATCCAGGAATGTGCAAGCCACAAAAATAACCTGCGGACCAGGCCATGGTATCAGCATCGGAAGCTTAGGGTCTGGGGAATCCAAGGATTTTGTTTCAGGAATAATGGTAAACGGAGCTAAATTTTTTGGAACCACAAATGGAGTAAGAATTAAAACATGGCAGGGAGGGTCAGGAAGTGCAAGCAACATCAAGTTTCAGAACATTCAAATGGAGAAAGTAACGAACCCCATAGTGATAGATCAAAATTACTGTGATCAAGCGACACCATGCAAAAAACAAAAATCTGCAGTTCAGATTAAGAATGTCTTGTACCAAAACATAAAGGGCACAAGTGCTTCTGATGTGGGTGTGCAATTTGATTGCAGCCAGAACTTTCCATGCGAAGGGATAGTGTTGCAGAACATAGATCTGCAACATGAAGGTGGAAGAGAGGCCAAGGCTTCATGCAACAGTGTTCAATTGTCCTACAGAGGAGATGTTAACCCTCAATGCCCATAG 1305 0.4222 MALPRHHLLFLVAIIMLSFADSTVPEDPLLLFHEASSKDNNFIMQSTHVLNLKSFDKLGQISSSPKMVNVNDYGARGDGKSDDTLAFKKAWEETCSSGRAVFVVPQKNYLLKPITFSGPCKSNIAVQITGTLEASDNLSDYSKDRAHWLMFDSVQKLSVKGGGTIDGNGNIWWQNSCKRNQKLPCKKAPTALTFYKCNDITVEDLTIKNGQQMHVSFEESENVIVSGLTVTAPEDSPNTDGIHITNTQNIQILNTVIGTGDDCISIESGSRNVQATKITCGPGHGISIGSLGSGESKDFVSGIMVNGAKFFGTTNGVRIKTWQGGSGSASNIKFQNIQMEKVTNPIVIDQNYCDQATPCKKQKSAVQIKNVLYQNIKGTSASDVGVQFDCSQNFPCEGIVLQNIDLQHEGGREAKASCNSVQLSYRGDVNPQCP 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00286 434 Gene3D - 59 430 IPR012334 -
Phco6g00286 434 PANTHER - 66 419 - -
Phco6g00286 434 Pfam Glycosyl hydrolases family 28 100 422 IPR000743 GO:0004650|GO:0005975
Phco6g00286 434 SMART pbh1 220 246 IPR006626 -
Phco6g00286 434 SMART pbh1 329 350 IPR006626 -
Phco6g00286 434 SMART pbh1 247 268 IPR006626 -
Phco6g00286 434 SMART pbh1 197 217 IPR006626 -
Phco6g00286 434 SMART pbh1 300 321 IPR006626 -
Phco6g00286 434 SUPERFAMILY Pectin lyase-like 62 433 IPR011050 -
Phco6g00286 434 ProSitePatterns Polygalacturonase active site. 277 290 IPR000743 GO:0004650|GO:0005975
Phco6g00286 434 FunFam Polygalacturonase QRT2 54 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00286 Phco-Chr6 2814247 2817934 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00286 6 2814247 2817934 Phco6g00286 6 2814247 2817934 ECH
Phco6g00286 6 2814247 2817934 Phco2g01552 2 45698531 45701068 PCT