Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01552 ATGGCCCTCCTTAAACACCTCCTCCTCTCCTTCCCCATTTTCATCATTTCTTTTGTTTTTTGCTATGGCAATTTGCTAGAGGACCCACTTACCAGTATATATGTTCATCATTCACCTTCCACTGATAATGGTGGGACATTATTCAAGAACTTCAACAAGCAAAGCACAAATCTTTTGAGCTTAAACAGGTTGGAGAAGCGTAGCTCCCTTAGAAAGGTTACTGTCAATGATTATGGAGCTGAGGGGAATGGTGATACTGATGACTCAGAGGCTTTCAAGAAGGCTTGGGATGTGGTATGTTCTTCTGGGGAAGCAATTCTTGTGGTGCCTGAGGAGAATTATCTGCTCAAACCAATCAGATTCTCTGGCCCTTGCAAACCTAACATTGAAGTCCAGATTTCTGGAACCCTTCAAGCATCAGATGATCCATCAGATTACAAGGAAGACAGCAGACACTGGCTTGTGTTTGACAATATTAAGAAACTGTTTGTTTATGGTGGTGGAACCATCGATGGAAACGGCAAAATATGGTGGAAAAACTCATGCAAAAGGAACAAAAAGCGACCATGCAAGGATGCTCCAACGGCTCTGACTTTCGATAATTGTGAGGACTTGATAGTTGAGAACCTGAACATAGAAAATGCTCAACAAATCCACGTTTCATTCCAAGACTCCGAGAATGTTAAGGTTTCTAGCCTTAACGTGATTGCACCAGAGGATAGTCCCAACACCGATGGGATTCATGTCACAAATACGCAAAACATCAAAATCTCAGATTCTGTCATAGGAACTGGTGATGATTGCATATCTATTGTACATGGATCTAAAAATGTAGAAGCTACAAATATTACATGTGGACCGGGTCATGGTATCAGTATTGGAAGCTTAGGGGCCGGAAAATCCAAGGAAATTGTTTCAGGAATACTAGTGAATGGAGCCAAGATTTTTGGAACCAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGTGACATCCAATTTCAGAACATTGAGATGGACAATGTGACCAACCCCATAATAATAAATCAGAATTACTGTGACAAGAAAAAAAAGCCATGCAAAAAACGGCTTTTGCAGAAATCCGCTATTGAAATCAAGAATGTGTTGTACCAGAACATAAGTGGTACAAGTGCTTCTGATATAGCTGTGAAGTTTGACTGCAGTGAGAAATTTCCGTGCCAGGAGATAAAATTGCAGAACATAGACCTTGAATGTGAAGGAGGAGATGATGCTGAGGCTTGGTGTAACAATGTTGAATTATCTTACTTAGGACACGTTAAGCCTCGTTGCAATTCAGAAAACATTTTTACCTCTTTATGGAAATACTTTTCATGGTATATATGA 1380 0.4036 MALLKHLLLSFPIFIISFVFCYGNLLEDPLTSIYVHHSPSTDNGGTLFKNFNKQSTNLLSLNRLEKRSSLRKVTVNDYGAEGNGDTDDSEAFKKAWDVVCSSGEAILVVPEENYLLKPIRFSGPCKPNIEVQISGTLQASDDPSDYKEDSRHWLVFDNIKKLFVYGGGTIDGNGKIWWKNSCKRNKKRPCKDAPTALTFDNCEDLIVENLNIENAQQIHVSFQDSENVKVSSLNVIAPEDSPNTDGIHVTNTQNIKISDSVIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLGAGKSKEIVSGILVNGAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMDNVTNPIIINQNYCDKKKKPCKKRLLQKSAIEIKNVLYQNISGTSASDIAVKFDCSEKFPCQEIKLQNIDLECEGGDDAEAWCNNVELSYLGHVKPRCNSENIFTSLWKYFSWYI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01552 459 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Phco2g01552 459 Gene3D - 56 451 IPR012334 -
Phco2g01552 459 SUPERFAMILY Pectin lyase-like 72 447 IPR011050 -
Phco2g01552 459 SMART pbh1 225 251 IPR006626 -
Phco2g01552 459 SMART pbh1 334 355 IPR006626 -
Phco2g01552 459 SMART pbh1 202 222 IPR006626 -
Phco2g01552 459 SMART pbh1 305 326 IPR006626 -
Phco2g01552 459 SMART pbh1 252 273 IPR006626 -
Phco2g01552 459 FunFam Polygalacturonase QRT2 59 443 - -
Phco2g01552 459 Pfam Glycosyl hydrolases family 28 106 431 IPR000743 GO:0004650|GO:0005975
Phco2g01552 459 PANTHER - 73 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01552 Phco-Chr2 45698531 45701068 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01552 2 45698531 45701068 Phco2g01552 2 45698531 45701068 ECH
Phco6g00286 6 2814247 2817934 Phco2g01552 2 45698531 45701068 PCT