Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00270 ATGGAGGGTTGCAAAAACTCCCCTCTAAAGCCATGGAAGAAAGGGCCAACAAGGGGCAAAGGTGGCCCCCAAAATGCCTCATGTGAGTATAGAGGTGTCAGGCAAAGAACATGGGGCAAATGGGTGGCTGAGATAAGAGAGCCTAAGAAGAGATCAAGACTCTGGCTTGGCTCCTTTGCCACAGCAGAAGAAGCTGCCTTGGCCTATGATGAGGCTGCGAGGAGACTCTATGGTCCTGATGCTTACCTCAACCTTCCCCACAAGCAACCAAACCTCATAAACTCCACCACCAGATCTCAGAAGTTCAAGTGGTTCCCTTCCAAGAACTTCATCTCCATGTTCCCTTCACGTGGATTGCTCAACCTCAATGCTCAACCGAGTGTCCATGTCATCCACCAGAGGCTGCAACAGCTTAAGCAAAATGGGGTGGTTGCAACAACAACTCAACCACCACATTCTAGTTCATCCACTCATCCAAGGGTGGTAGAACTTGAGAACTTAGTCAGCCAAAACCATTCAGAGATTCTCCCTCCACTTCCCCAAGATTCTCAAGTTTCCCCACAAAAAATAATTGGTGATTTTGAGGAGAAACCCGAGATAGACCTGCTTGAATTTCTTCAACAGATGGGAATACTAAAAGATGAAAGAGAGGCAGAGAAAACTGATAGCTCGGGAAGTTCAACAGTGTCTGAAGCTGCATCAAGAGATGAAAATGAACAACCAGGAGTGTTTTCTGACATGAGAAGTGTTAACTGGGAGGAATTGATTGAGATGCATGACCATGAAGTTGTGTGTAACTATCTTGCATCAGAAGAAATCCAGTTTGAAGCATATGACATAAACGAGGACCTTACTTTCTCCACTTCCATTTGGAACAACTAA 882 0.4558 MEGCKNSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRSRLWLGSFATAEEAALAYDEAARRLYGPDAYLNLPHKQPNLINSTTRSQKFKWFPSKNFISMFPSRGLLNLNAQPSVHVIHQRLQQLKQNGVVATTTQPPHSSSSTHPRVVELENLVSQNHSEILPPLPQDSQVSPQKIIGDFEEKPEIDLLEFLQQMGILKDEREAEKTDSSGSSTVSEAASRDENEQPGVFSDMRSVNWEELIEMHDHEVVCNYLASEEIQFEAYDINEDLTFSTSIWNN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00270 293 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Phco6g00270 293 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Phco6g00270 293 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Phco6g00270 293 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Phco6g00270 293 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Phco6g00270 293 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 256 - -
Phco6g00270 293 MobiDBLite consensus disorder prediction 1 28 - -
Phco6g00270 293 MobiDBLite consensus disorder prediction 215 245 - -
Phco6g00270 293 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Phco6g00270 293 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Phco6g00270 293 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Phco6g00270 293 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00270 Phco-Chr6 2628715 2629596 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g00270 AP2 2.9e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00270 6 2628715 2629596 Phco6g00270 6 2628715 2629596 ECH
Phco2g01563 2 45847990 45848991 Phco6g00270 6 2628715 2629596 PCT