Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01563 ATGGGTTTTGCTACTTCTCCAAACGTGAAGACATTTATAGCAACCTACACCTTGCTCCTACATATCCCGCGCCTTGCATGCAGTTCCAAGTATCACCCGGCAGTGATACTCAAAGGACCTCTTTCCAGTGATCTAAGTTCAACTATCACTATATCAACCATGGATACTTGCAAGAAGTCTCCCCTGAAGCCATGGAAGAAAGGACCAACTAGGGGGAAAGGTGGTCCCCAGAATGCCTCTTGCGAGTACCGAGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTGCTGCCCAGGTCTACCTCACCTATTACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCCATGTTCCCTTCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAGCTCAAGCAAAATACAGTTGAGAGGCAATTCCCAAATAGCTCGTTCAATGATCCAGAGGCAGAAATTCAGAATGTAGACGCTACGAATGATGGAGAAAGTCCTCCAAAAGACTCTCGAACATCATCATCAGAGGTTCTAGGAGATCTTCAAGAGAAACCCCAGATAGACCTTCATGAGTTTCTTCAACAGCTAGGAATACTTAAAGAAGAAAGACAGTCAGACAGAACTGATAGCACAGAAAGTTCAACAGTGCCTGAAGCTGTGTTGAGAGATGACAATGATGAATTGGGAGTGTTTTCTGACACGAGTGTTAACTGGGAGGCATTGATTGAGATGCATGGAATTGCAGGTATTGAGGAATTAGAATCCACCCCGCTTGAAGCATATGGCCCAAATGATGACCTTACTTTCTCAACTTCCATTTGGAACTTCTAG 1002 0.4491 MGFATSPNVKTFIATYTLLLHIPRLACSSKYHPAVILKGPLSSDLSSTITISTMDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLLPRSTSPITPGKFKWFPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKQNTVERQFPNSSFNDPEAEIQNVDATNDGESPPKDSRTSSSEVLGDLQEKPQIDLHEFLQQLGILKEERQSDRTDSTESSTVPEAVLRDDNDELGVFSDTSVNWEALIEMHGIAGIEELESTPLEAYGPNDDLTFSTSIWNF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01563 333 CDD AP2 81 141 IPR001471 GO:0003700|GO:0006355
Phco2g01563 333 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Phco2g01563 333 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Phco2g01563 333 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Phco2g01563 333 MobiDBLite consensus disorder prediction 214 237 - -
Phco2g01563 333 MobiDBLite consensus disorder prediction 257 278 - -
Phco2g01563 333 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Phco2g01563 333 MobiDBLite consensus disorder prediction 214 238 - -
Phco2g01563 333 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Phco2g01563 333 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Phco2g01563 333 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 52 295 - -
Phco2g01563 333 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Phco2g01563 333 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01563 Phco-Chr2 45847990 45848991 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g01563 AP2 2.5e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01563 2 45847990 45848991 Phco2g01563 2 45847990 45848991 ECH
Phco2g01563 2 45847990 45848991 Phco6g00270 6 2628715 2629596 PCT