Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00192 ATGCTGAGCGTGGTGCGCGTGCACCTGCCCTCGGAAATTCCCATTGTAGGCTGCGAACTCACACCGTACGTCCTCCTTCGCCGCCCCGACAAGAGCGTTTCCACCGACGATGTTCCCGAAACCTCCCCTTTAGACGGTCATTTCCTCCGTTACAAATGGTATCGTGTACAGAGTGATAAAAAAGTTGCTGTCTGTAGCATACATCCATCAGAGCAAGCCACACTGCAATGCCTAGGTTGTGTTAAGGCAAAAATTCCTCTTTCCAAGAGTTACCACTGCACCACAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACATGATCGTGCTGCAAGTGCTCTTAATGAAAATGGAAATGAGGAGGAAGAGGTGTTTGGGCGCTTTAATAGTACTGGGTCTGGGGCAATCAATTCCAGCTTATCTGCTTCTGCTTCAAGTGCTAGCTTGGCAAATGGGTCTGCAACACCTTTGTATCCCGCTGCTGTAACACAAAGAAGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACTTATACCCCTACTGCTGATGATGTTGGTCATGTCCTTAAGTTTGAGTGTGTTGTAGTTGATGCAGAGACAAAACTGCCTGTGGGACCTGTTAACACTATTCTAACTTCACGTGTCATTCCTGCTCCTTCACCTATTCCACGCCGGCAGATTCGTGTTGATGGAATGGGGCATTTAGATGTGGATGGAAGAATGACAACTTCAGGAACTTTTACTGTTCTATCCTACAATATATTGTCTGAAGCATATGTCTCTAATGATCTATACAATTACTGCCCTTCGTGGGCACTTTCTTGGCCATATCGCCGGCAAAATTTGTTACGAGAAATTGTTGGTTACCGTGCAGACATTATTTGTCTTCAGGAGGTTCAAAGTGATCATTATGACGATTTTTTTTCTCCTGAACTGGACAAACATGGATATTATGGTCTTTACAAGAGAAAAACAAACGAGGTATACAGTAGCAACACAAATACAATTGATGGTTGTGCAACATTTTTCCGCAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACAGAGGCTACAATTCCAACCACTCAGAAAAAAAGTGCCTTGAATCGACTGGTTAAGGATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAACCTTTTGATAATCCTGGGAAAAGACAGCTTCTTTGTGTGGCAAATACACATGTAAATGTCTCTCAAGATTTAAAGGATGTGAAACTCTGGCAGGTTCACACTCTCTTAAAAGGGTTGGAGAAAATAGCTGCAAGTGCAGACATTCCAATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCTGATTTAGCAGTTGACCCACTTAACATTTTACGTCCTCACAGCAAGTTGGTTCATCAGTTGCCATTGGTCAGTGCATACTCATCTTTTGCGAGAACTGTTAGCCTTGGATATGATCAGCATAAAAGGAGACTGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGCGGATTCTTTGGTTGTGGAATCACATAGCTCTCTTAGCTGA 1695 0.426 MLSVVRVHLPSEIPIVGCELTPYVLLRRPDKSVSTDDVPETSPLDGHFLRYKWYRVQSDKKVAVCSIHPSEQATLQCLGCVKAKIPLSKSYHCTTKCFSDAWQHHRVLHDRAASALNENGNEEEEVFGRFNSTGSGAINSSLSASASSASLANGSATPLYPAAVTQRSGETWFEVGRSKTYTPTADDVGHVLKFECVVVDAETKLPVGPVNTILTSRVIPAPSPIPRRQIRVDGMGHLDVDGRMTTSGTFTVLSYNILSEAYVSNDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYDDFFSPELDKHGYYGLYKRKTNEVYSSNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEATIPTTQKKSALNRLVKDNVALIVVLEAKVNNQPFDNPGKRQLLCVANTHVNVSQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVSLGYDQHKRRLDGGTNEPLFTNVTRDFIGTLDYIFYTADSLVVESHSSLS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00192 564 SUPERFAMILY DNase I-like 248 555 IPR036691 -
Phco6g00192 564 Gene3D Endonuclease/exonuclease/phosphatase 221 563 IPR036691 -
Phco6g00192 564 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 160 557 - -
Phco6g00192 564 CDD Deadenylase_CCR4 252 560 - -
Phco6g00192 564 FunFam Carbon catabolite repressor protein 4 1 219 564 - -
Phco6g00192 564 Pfam Endonuclease/Exonuclease/phosphatase family 253 560 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00192 Phco-Chr6 1855947 1861809 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00192 6 1855947 1861809 Phco6g00192 6 1855947 1861809 ECH
Phco2g02307 2 53598686 53603322 Phco6g00192 6 1855947 1861809 PCT