Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00165 ATGGTTCAGTTTCGGTTAAAACCTGTAACGGCATTCGCCGTGAAGCCGTCACCGTTGGTGGCTTTCGTAACGGTAATCGTCATTGGCGTGGTGGGGTTTTATTCGCTGCATTTTCCTTTCCGTTCCGCCGCTTCCCTCGACCCCTCGCGCTTCGGCCACGTGTTCCTGTCGTCGTCCTCCAACGCCACGATCTCCAACTACCTGCGCGCGCTCACCGTGCACCCTCACCTCGCGGGAACAAAAGCCGGCTCCCTAACCGCACGCTACGTGCTCAACCACTTCACCGGCCTCGGGCTCCGAGCCCGCACCGCGAGGCACTCCGCGCTGTTGTCGTACCCACTGAGCTCCTCGCTCGCGGCGCATTTTAGCGACGGTTCAAGTTTGGAGTTTCGGTTGGGGGAGGGACAGGGGGACGAGGAGGTGGTGGCGCCGTACCACGCCTACTCGCCGTCGGGGTCGGCGTGGGCGGCGGCGGTATTTGTGAACTACGGGCGGGAGGAGGACTTCCGGTTGTTGGCTGCGGCGGGGGTGGGGGTGGCGGGGTGCGTGGCTGTGGCGAGGAGCGGCGGGGGAGTGGGGCGGGGGGAGGTGGTTGAGGCGGCGGAGAGGCATGGTGCGGCGGCGGTGGTGGTGTTCGGGGGTGACACGTGGCCCAGGGGGTTTGAGAGGGGACACGTGATGAGAGGGGGGATTGGGGACCCGCTGAGTCCTGGGTGGGGTGGGGAGGATGGCGGCGAGAGCTTGGGCTTGGATGATAGTGAGGTTTTGAAAAGGTTTCCTAAAATTCCATCCATGCCCTTGTCTGCAGAGGCTGCTGAGAGGATCTTGGTCTCGCTTGGTGGAGCTCCTCTGCCCTTGGATTGGAGGGGTACCCTAAAGTCCTCCCAGGTTAGGAATGTTGGTCCTGGCCCCACAATCCTCAACTTCACTTATCAGGGAGAGATGAAAGTGGCTACCATTGAAAACGTTTTTGCCATTATCAAGGGACGGGAAGAATCTGATCGCTATGTGCTGCTTGGGAACCATAGAGATGCATGGACATATGGTGCTGTTGACCCCAACAGTGGGACAGCTGCCTTACTTGACATTGCTCGTAGATATTCTATTCTATTGCGTTTGGGGTGGACTCCACGGAGGACCATCATTCTATGCAGTTGGGATGCAGAGGAATTTGGAATGATAGGATCCACTGAGTGGGTTGAACAGAACCTTGTCAATCTTGGTTCGAAAGCTGTAGCATACCTTAATGTAGACTGTGCTGTTCAAGGGTCTGGTTTCTTTGCTGGCTCAACTCCTCAGCTAGATGATCTCCTTCTCGATGTCATAAAAAAGGTCAAGGATCCTGACTCTGAGGGTACAACGATATATCAGAATTGGGCAGCTGCTGCTGGAAAATCTAATATTCAAAGGCTGGGTAGAGTAGATTCTGATTTTGCTCCATTTGTGCAACATGCAGGGGTTCCATCTATTGATATGTATTATGGAAAAGATTATCCTGTCTATCACACTGCTTTCGACTCCTATAACTGGATGACAGAGTTTGGAGATCCATTCTTTCACCGCCATGTAGCTGTTACAGGAATTTGGGGGCTTCTAGCCCTGCGCCTTGCTGATGATTCCATCATACCTTTCAATTATCTGTCTTATGCGGATCAGTTACAGGTGTACAATGACATATTGAGCAACTTGTTAGAAAAGCAAATTTCTCTACATCCACTAAATGCGTCGATTCAAGAATTTGCTTCTGCTGCCAAAGAAGCTAATGATGAATCAAAGAAACTGAGATTGCAAGAAAATTCAGATAATTTTGTGGATATGAAAATCCGAGCATTGAATGATAGACTAATGCTTACGGAAAAAGGCTTCTTGGATGTTGACGGGCTTCGAGGAAGGCAATGGTTTAAGCATCTTGTTTTTGGGCCTCCCAGAGACCATGAAAGCAAGTTGGATTTCTTCCCTGGAATCGCTGACTCTATGTCTGAGATGTTTAAAATGAGTGAAAAAGAAAGGCTGGCTGCAATTCAGCATGAGGTTTGGAGGGTTGTGAGGGCTATTCAGAGAGCTGCTTCAGCACTAAGAGGAGATTTGACCTAA 2094 0.5191 MVQFRLKPVTAFAVKPSPLVAFVTVIVIGVVGFYSLHFPFRSAASLDPSRFGHVFLSSSSNATISNYLRALTVHPHLAGTKAGSLTARYVLNHFTGLGLRARTARHSALLSYPLSSSLAAHFSDGSSLEFRLGEGQGDEEVVAPYHAYSPSGSAWAAAVFVNYGREEDFRLLAAAGVGVAGCVAVARSGGGVGRGEVVEAAERHGAAAVVVFGGDTWPRGFERGHVMRGGIGDPLSPGWGGEDGGESLGLDDSEVLKRFPKIPSMPLSAEAAERILVSLGGAPLPLDWRGTLKSSQVRNVGPGPTILNFTYQGEMKVATIENVFAIIKGREESDRYVLLGNHRDAWTYGAVDPNSGTAALLDIARRYSILLRLGWTPRRTIILCSWDAEEFGMIGSTEWVEQNLVNLGSKAVAYLNVDCAVQGSGFFAGSTPQLDDLLLDVIKKVKDPDSEGTTIYQNWAAAAGKSNIQRLGRVDSDFAPFVQHAGVPSIDMYYGKDYPVYHTAFDSYNWMTEFGDPFFHRHVAVTGIWGLLALRLADDSIIPFNYLSYADQLQVYNDILSNLLEKQISLHPLNASIQEFASAAKEANDESKKLRLQENSDNFVDMKIRALNDRLMLTEKGFLDVDGLRGRQWFKHLVFGPPRDHESKLDFFPGIADSMSEMFKMSEKERLAAIQHEVWRVVRAIQRAASALRGDLT 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00165 697 Pfam Peptidase family M28 322 509 IPR007484 -
Phco6g00165 697 Gene3D - 116 313 - -
Phco6g00165 697 SUPERFAMILY PA domain 109 324 IPR046450 -
Phco6g00165 697 CDD M28_PSMA_like 318 544 - -
Phco6g00165 697 Coils Coil 577 597 - -
Phco6g00165 697 Pfam PA domain 148 215 IPR003137 -
Phco6g00165 697 Gene3D Zn peptidases 62 543 - -
Phco6g00165 697 SUPERFAMILY Transferrin receptor-like dimerisation domain 543 694 IPR036757 -
Phco6g00165 697 FunFam N-acetylated-alpha-linked acidic dipeptidase 2 544 695 - -
Phco6g00165 697 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 23 694 IPR039373 -
Phco6g00165 697 Pfam Transferrin receptor-like dimerisation domain 568 692 IPR007365 -
Phco6g00165 697 Gene3D - 546 697 IPR036757 -
Phco6g00165 697 FunFam Os01g0740650 protein 313 543 - -
Phco6g00165 697 SUPERFAMILY Zn-dependent exopeptidases 60 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00165 Phco-Chr6 1615774 1621254 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00165 6 1615774 1621254 Phco6g00165 6 1615774 1621254 ECH
Phco2g02292 2 53504383 53510052 Phco6g00165 6 1615774 1621254 PCT