Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00153 ATGGAGGTTCCGGAAATGGGAGGCAAGACCGAAAGTCACATCACATCGGCAGCAGCCTTTGTGGAAGGGGGGATTCAAGAAGCATGTGATGATTCTTGCAGCATATGCCTTGAGGAATTTTGCAAAAGTGATCCTGCAACTGTCACTAATTGCAAGCACGATTTCCATCTGCAGTGCATTCTTGAATGGTCTCAGAGAAGCTCTCAATGCCCTATGTGTTGGCAGGCTATCAGCTTGAAGGATGCTACCAGCCAAGAACTGCTCGAGGCAGTAGAGATGGAGAGGAGCTTGAGGGATACCCCATCAAGAAATGCTGCAATTTTTCATCGTTCAGAAGTTGGTGATTTTGAGTTGCAGCATTTACCCATGGGACATGAGTCTGATATTGAAGAGCGGATCATTCGACATTTAGCTGCTGCAGCATCAATGCGAAGAGCACACCTTCTCAGCCAGAGGCAAAGTCAACGAACTAGGTCATCTGCTCATGGCCATCCGCACTACTTTGTGTACTCAACTCAGCCCAGTGCACCTCCATCAGCTGCTGGAGGGGGAAGTGAACCAGCTGCAATTCCTGCTGGAAATCCATCGGCTCCTCTTATATTTGATGGAACAGAGCAATCATCACCGGAGCAGATGCCTCTATTCCAAACTAGGGGTTCTTCTTTGACTTCTGGCTCTACAGTCACGACAACAAATCTTCAAGGAGTTCACTCTAATCATAGAAGCTTTGCCTCTCATTCCTTGCCTGCAAGCCATGATGAACCACAGCCATCACAGCCATCCGAACAATCATTCTCAGATTCTCTCCTTTCCAAATTCAATGCAGTATCCATGAGATACAAAGAATCAATTTCAAAGGGCACAAGGGTATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCTGTGTCAGAACTTGGTTCCGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACAGCAAGAGAAAATAATAGCGCTGCAGGCACTTCTTTATCAAATCATTCCATCGCAGAGACAAGCAACCAAAACAATGTGGAAGTTCGTGGAGAGAACTCTTTTCATGGTAGTAATACTCCTGCTACATTTTCTGCTAGCCCAGATGCAAACTGA 1140 0.4614 MEVPEMGGKTESHITSAAAFVEGGIQEACDDSCSICLEEFCKSDPATVTNCKHDFHLQCILEWSQRSSQCPMCWQAISLKDATSQELLEAVEMERSLRDTPSRNAAIFHRSEVGDFELQHLPMGHESDIEERIIRHLAAAASMRRAHLLSQRQSQRTRSSAHGHPHYFVYSTQPSAPPSAAGGGSEPAAIPAGNPSAPLIFDGTEQSSPEQMPLFQTRGSSLTSGSTVTTTNLQGVHSNHRSFASHSLPASHDEPQPSQPSEQSFSDSLLSKFNAVSMRYKESISKGTRVWKERLFSPNSSVSELGSEVRRELNAKIASVSRLMERLETARENNSAAGTSLSNHSIAETSNQNNVEVRGENSFHGSNTPATFSASPDAN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00153 379 MobiDBLite consensus disorder prediction 200 267 - -
Phco6g00153 379 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 22 81 - -
Phco6g00153 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 118 IPR013083 -
Phco6g00153 379 Pfam Ring finger domain 31 73 IPR001841 -
Phco6g00153 379 SUPERFAMILY RING/U-box 25 80 - -
Phco6g00153 379 MobiDBLite consensus disorder prediction 146 267 - -
Phco6g00153 379 MobiDBLite consensus disorder prediction 330 379 - -
Phco6g00153 379 SMART ring_2 33 73 IPR001841 -
Phco6g00153 379 MobiDBLite consensus disorder prediction 147 161 - -
Phco6g00153 379 Coils Coil 310 333 - -
Phco6g00153 379 MobiDBLite consensus disorder prediction 332 379 - -
Phco6g00153 379 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Phco6g00153 379 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 11 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00153 Phco-Chr6 1509640 1513704 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00153 6 1509640 1513704 Phco6g00153 6 1509640 1513704 ECH
Phco2g02276 2 53380735 53384370 Phco6g00153 6 1509640 1513704 PCT