LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco2g02276	ATGCCATGCCTCTGTCCTTACCCTTATTCTCTTTTCCTCTATGCATTCCCAGGTGACTTTTGGAAGGTTTTAGAGATGGAAGACAATAAAGAAAGTAAAATGATATCGGCTGCGGCCTTTGTAGAAGGGGGGATTCAGGACTCCTGTGATGATGCTTGCAGCATATGTCTTGAGGATTTTTGTGCAAGTGATCCTTCAACGCTCACTAATTGCAAGCATGAGTTTCACCTACACTGCATTCTCGAATGGTGTCAGAGAAGCGCCCAGTGTCCTATGTGTTGGCAATCTATTAGCATGAAGGATCCTACTAGTCAGGAATTGTTTGAGGCAGTAGAGCAGGAGAGGAAGTTGAGGGCTATCCCATCAAGAAATGCTACTATTTTTCATCACCCTGCATTTAGTGATTTTGAATTGCAGCACTTGCGCATGAGTATAAATGATACTGAGCTTCAAGAGCGAATTATTCAACATTTAGCTGTTGCTGCAGCGATGAGGAGAGCAAACCAACTTGGTCGCAGGGCAGGACAACATGCTCGTTCATCAGCTCATGGTCATCCACAGCCTTTAGTGTTATCTAATCAGACTATAGCACCTGCATTGAGTCCTGATTCAGCTGCTGAAGAGGAAAATGATCGAACGAGAATTCATAATGCAATTCCATCCACCCCAATAAAATCTGTGAGAAATGAAGCATTGCAACAGATCCTGCACGTTCAAACTCAAAGCTCTTCTTCAGCTTCTGGATCTAGCATCATGGCTACAAGTCGCCAAAGAATTTACTCCAATGATAGAGGTTCTACTACTCGCGCATCATCAGTAAACGAAGATAGAGCAGAGCCATCAGAATTCCAGTCACATTCTGATTCGCTGCGGTCCAGACTCAATGCAGTGTCCACGAGATACAAAGTATCAATCTCAAAGGGCGCAAGGGGATGGAAGGAAAGGTTGTTCTGTCGTAGTTGTTCCATGTCAGAACTTGGTTCAGAAACAAGGAGGAGAGAGATGAATGCTGAGATTGCTAGTGTATCCGGATTAAAGGAATCCCGTGAATGTAGTGAAAATAGTAAAGCTGTGGGTACTTCTTTGTCTAGTCATATGGAGGAATGTTCCATTACAGAGGTGAGCAACCAGAACGATGTTGAAGCTAGCGGGGAGACCTCTTCACATGATGACAATACATCATCTGCTTGTTTTGCTACCTCACATTTAAATTGA	1215	0.4362	MPCLCPYPYSLFLYAFPGDFWKVLEMEDNKESKMISAAAFVEGGIQDSCDDACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSAQCPMCWQSISMKDPTSQELFEAVEQERKLRAIPSRNATIFHHPAFSDFELQHLRMSINDTELQERIIQHLAVAAAMRRANQLGRRAGQHARSSAHGHPQPLVLSNQTIAPALSPDSAAEEENDRTRIHNAIPSTPIKSVRNEALQQILHVQTQSSSSASGSSIMATSRQRIYSNDRGSTTRASSVNEDRAEPSEFQSHSDSLRSRLNAVSTRYKVSISKGARGWKERLFCRSCSMSELGSETRRREMNAEIASVSGLKESRECSENSKAVGTSLSSHMEECSITEVSNQNDVEASGETSSHDDNTSSACFATSHLN	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco2g02276	404	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	30	103	IPR013083	-
	Phco2g02276	404	MobiDBLite	consensus disorder prediction	170	189	-	-
	Phco2g02276	404	PANTHER	ZINC FINGER, RING/FYVE/PHD-TYPE	33	102	-	-
	Phco2g02276	404	SMART	ring_2	53	93	IPR001841	-
	Phco2g02276	404	SUPERFAMILY	RING/U-box	46	101	-	-
	Phco2g02276	404	MobiDBLite	consensus disorder prediction	238	274	-	-
	Phco2g02276	404	MobiDBLite	consensus disorder prediction	238	290	-	-
	Phco2g02276	404	ProSiteProfiles	Zinc finger RING-type profile.	53	93	IPR001841	-
	Phco2g02276	404	MobiDBLite	consensus disorder prediction	202	224	-	-
	Phco2g02276	404	Pfam	Ring finger domain	52	93	IPR001841	-
	Phco2g02276	404	MobiDBLite	consensus disorder prediction	356	404	-	-
	Phco2g02276	404	FunFam	E3 ubiquitin-protein ligase RHF2A isoform X1	31	103	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco2g02276	Phco-Chr2	53380735	53384370	Dispersed/Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g02276	2	53380735	53384370	Phco2g02276	2	53380735	53384370	ECH
	Phco2g02276	2	53380735	53384370	Phco6g00153	6	1509640	1513704	PCT