Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00134 ATGGACAACTCGACTGATTCATCTGGGTTCCTTGGCTCCAGCAACATAAGTGGCTTTGGCATGGGCATAGGAATTTCAATTGGGATTCTTCTGCTTATCACAACCATCACACTCACCTCCTACTTCTGCACCAGGTCACAGTTGCCAGCTGCTCCAAGGAGAAGAACTTCTACTGGCCCACAATTCCTTGAGCCACAGCACACTATTGTTGATGTTGGACTGGATGAAGCCACAATCATGAATTACCCCAAGGTGCTGTACTCTGAAGCCAAGCTAAGGAAATCTGATTCCACTGCAACAAGCTGTTCCATATGTCTGGGAGATTACAAAAGTTCTGATGTGCTGAGGGTATTGCCAGATTGTGAACATGTCTTTCACCTAAAGTGCATAGACCCATGGTTGAGGCTGCATCCAACTTGTCCTCTCTGCAGAACATCCCCTATCCCAACACCTCTCTCAACACCTCTGGCAGAAGTTGTCCCATTAGCAACAAGGCGAGATTAA 504 0.4702 MDNSTDSSGFLGSSNISGFGMGIGISIGILLLITTITLTSYFCTRSQLPAAPRRRTSTGPQFLEPQHTIVDVGLDEATIMNYPKVLYSEAKLRKSDSTATSCSICLGDYKSSDVLRVLPDCEHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00134 167 SMART ring_2 102 143 IPR001841 -
Phco6g00134 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 158 IPR045899 -
Phco6g00134 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 148 IPR013083 -
Phco6g00134 167 Pfam Ring finger domain 101 144 IPR001841 -
Phco6g00134 167 CDD RING-H2_EL5-like 101 144 - -
Phco6g00134 167 FunFam E3 ubiquitin-protein ligase ATL6 64 149 - -
Phco6g00134 167 SUPERFAMILY RING/U-box 78 149 - -
Phco6g00134 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00134 Phco-Chr6 1288589 1289092 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02267 2 53313172 53313687 Phco6g00134 6 1288589 1289092 PCT