Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02267 ATGAGCAGCAACAGTGCTGTTAATTCCCCTGGATTCCTTGGCTCAAGCAACCTCAGTGGCTATAGTTATGGCATAGGAATCTCCATTGGAATTCTCTTGCTCATCATAACCATCACTCTAACTTCCTACTTCTGCACCAGAACACATGTCTCATTTGCTCCACCACCTAGGAACAGGAGACCCACCCCGAATGTTCTTCAACCACAGCACTCTATAGTTGATGTAAGTTTAGATGAAGCCACCATTCTGAGTTATCCAACCCTGCTGTACTCTGAAGCCAAGGTCCAGAAGTCTGATTCCACTGCAACATGTTGTTCCATTTGTTTGGCAGATTACAAGGGTACTGATATGCTTCGCCTGCTACCTGATTGTGAACACCAATTCCACCTCAAGTGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCAGTTTGTAGAACATCTCCAATTCCAACGCCCCTCTCAACTCCTCTGGCTGAAGTGGTTCCATTGGCTAGCCGACAGGATTCATAG 516 0.4632 MSSNSAVNSPGFLGSSNLSGYSYGIGISIGILLLIITITLTSYFCTRTHVSFAPPPRNRRPTPNVLQPQHSIVDVSLDEATILSYPTLLYSEAKVQKSDSTATCCSICLADYKGTDMLRLLPDCEHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRQDS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02267 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Phco2g02267 171 SUPERFAMILY RING/U-box 85 152 - -
Phco2g02267 171 SMART ring_2 105 146 IPR001841 -
Phco2g02267 171 FunFam E3 ubiquitin-protein ligase ATL6 66 152 - -
Phco2g02267 171 Pfam Ring finger domain 105 147 IPR001841 -
Phco2g02267 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 161 IPR045899 -
Phco2g02267 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02267 Phco-Chr2 53313172 53313687 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02267 2 53313172 53313687 Phco6g00134 6 1288589 1289092 PCT