Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00131 ATGGTGTTCTCTTTCTCCATACACCAAAACCTTAAAATGAACGACTTGTTCTCGGGCTCCTTCTCCCGCAACACCGACCAAGTCTCGCCGGACAACCATCACCATGTGGTCGAGATGGCGGCGGTGGAGGGCGGCGTGAACCTGGATAAGTTCTTTGAGGAAGTTGAGCAGGTAAAAGAAGAGTTGAAAGAGCTAGAGCATCTCCATGAGAACTTACGTGGTTCCCACGAAAAAAGCAAGACTCTTCACAGTGCTAATGCTGTGAAAGAGCTTCGCTCACGCATGGATGCTGATGTAGCACTGGCTTTAAAGAAAGCCAAGCTAATCAAGATCCGGCTCGAAGCGTTAGACCGGTCCAACCAGGCAAGCCGAAATTTGCCAGGTTCTGGACCTGGTTCCTCCTCGGACCGGACCAGAACATCTGTGGTAAACGGATTGAGGAAGAAGCTGAAGGACTCCATGGACAACTTCAATAGCCTTAGACAACAGATATCGTCGGAGTACAGGGAAACCGTGCAGCGGAGATATTATACCGTTACCGGAGAGAACCCTGATGACAAAACCGTTGACCTTCTCATTTCTACTGGTGAGAGTGAAACATTTTTGCAGAAAGCGATTCAGCAGCAAGGTAGAGCGAGTGTGATGGACACGATCCAAGAGATTCAAGAGAGGCACGACACAGTGCAAGAGATAGAGCGAAACCTGAAGGAGCTGCACCAGGTGTTCCTTGACATGGCTGTGTTGGTGCAGTCCCAGGGAGAACAATTGGACGACATCGAGAGCCATGTGGCACGTGCCAACTCGTACGTGCGAGGTGGGGTCCAGCAGCTCCAGGTAGCAAGGAAGCACCAGAAAAACACGCGAAAATGGACCTTCTTCGCCATCATTCTGCTCCTCATTATCATCTTGATCATAGTTCTGCCCATAGTCCTAAGAAATTGA 942 0.4989 MVFSFSIHQNLKMNDLFSGSFSRNTDQVSPDNHHHVVEMAAVEGGVNLDKFFEEVEQVKEELKELEHLHENLRGSHEKSKTLHSANAVKELRSRMDADVALALKKAKLIKIRLEALDRSNQASRNLPGSGPGSSSDRTRTSVVNGLRKKLKDSMDNFNSLRQQISSEYRETVQRRYYTVTGENPDDKTVDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVQEIERNLKELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLQVARKHQKNTRKWTFFAIILLLIIILIIVLPIVLRN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00131 313 Pfam SNARE domain 254 306 IPR000727 -
Phco6g00131 313 Coils Coil 48 75 - -
Phco6g00131 313 SMART tSNARE_6 213 280 IPR000727 -
Phco6g00131 313 Coils Coil 218 238 - -
Phco6g00131 313 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 45 175 - -
Phco6g00131 313 Gene3D - 46 178 - -
Phco6g00131 313 CDD SynN 48 205 IPR006011 GO:0016020
Phco6g00131 313 Pfam Syntaxin 50 253 IPR006011 GO:0016020
Phco6g00131 313 CDD SNARE_syntaxin1-like 217 278 - -
Phco6g00131 313 SMART SynN_4 43 169 IPR006011 GO:0016020
Phco6g00131 313 Coils Coil 143 163 - -
Phco6g00131 313 ProSitePatterns Syntaxin / epimorphin family signature. 224 263 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phco6g00131 313 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 218 280 IPR000727 -
Phco6g00131 313 SUPERFAMILY t-snare proteins 46 273 IPR010989 GO:0016020|GO:0016192
Phco6g00131 313 PANTHER SYNTAXIN 56 303 IPR045242 -
Phco6g00131 313 MobiDBLite consensus disorder prediction 121 141 - -
Phco6g00131 313 FunFam Syntaxin 132 211 311 - -
Phco6g00131 313 Gene3D - 207 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00131 Phco-Chr6 1257057 1259743 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00131 6 1257057 1259743 Phco6g00131 6 1257057 1259743 ECH
Phco2g02262 2 53264026 53265815 Phco6g00131 6 1257057 1259743 PCT