Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02262 ATGAACGACTTGCTATCGAGTTTGTTCTCCAAGGGAAAACAGCAGCAGCAGCAACAAGAAGGGCAGCACGTGATCGAAATAACACAAGGTGGCATGGCGTTGGACAAGTTCTTCCAAGAAGTGGAATCGGTGAAGGAAGAACTGAAGGAGCTAGAGCGTCTCCACCTAAGTCTCCGTGCCTCAAACCAAAACGGAAAAGCGCTTTACAGCCCGAAGGGCGTTAGGGAGCTTCGGTCTCGCATGGACCTGGACGTGGCTCTTGCTCTCACCAAAGCCAAGCTGGTGAAGACTCGCTTGGAGGCTCTCCACCGCGCCAACCAAGCCACCCTCTCCTTGCCCGACTGCGGACCCGGTTCGTACTCCGACAGGACCAGAACCGCACTGGTCGGAGCCTTGACCAAGAATCTGAAACAGTCCATGGAGAGTTTCAATAAGCTGAGGGAGCAGATATCGTACGAGTACAGAGACACCGTGCAACGTAGATACTACGCTGTCACTGGAGAGAATCCTGATGCTGAAACCATTGATCTCCTCATCTCCACGGGTGAGAGTGAAAATTTCTTACAGAAAGCCATCCAACAGCAAGGGAGAGCCACCGTCATGGACACCATCCAAGAGATTCAGGAGAGGCACGGCACGGTAAAAGAGATAGAGAGAAATCTACGGGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGTTGGTCCAACATCAGGGTGAACACTTGGATGACATAGAGAGCCACATGGAGCTTGCAAATTCCTTCGTGGCCAAAGGGGTGCATCATTTGCAGGTTGTGAGGAATCATCAGAAGAACACCCGTAACTTGACCTGTTTTGCCATACTCCTCTTCATTATCATGTTGGTCATAGTTCTACCCATTGTTTTCAGAAATTGA 897 0.5072 MNDLLSSLFSKGKQQQQQQEGQHVIEITQGGMALDKFFQEVESVKEELKELERLHLSLRASNQNGKALYSPKGVRELRSRMDLDVALALTKAKLVKTRLEALHRANQATLSLPDCGPGSYSDRTRTALVGALTKNLKQSMESFNKLREQISYEYRDTVQRRYYAVTGENPDAETIDLLISTGESENFLQKAIQQQGRATVMDTIQEIQERHGTVKEIERNLRELHQVFLDMAVLVQHQGEHLDDIESHMELANSFVAKGVHHLQVVRNHQKNTRNLTCFAILLFIIMLVIVLPIVFRN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02262 298 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phco2g02262 298 Pfam SNARE domain 242 292 IPR000727 -
Phco2g02262 298 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Phco2g02262 298 SMART SynN_4 29 155 IPR006011 GO:0016020
Phco2g02262 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Phco2g02262 298 Gene3D - 34 161 - -
Phco2g02262 298 FunFam Syntaxin 132 197 296 - -
Phco2g02262 298 MobiDBLite consensus disorder prediction 1 21 - -
Phco2g02262 298 Coils Coil 34 61 - -
Phco2g02262 298 Gene3D - 193 296 - -
Phco2g02262 298 PANTHER SYNTAXIN 20 286 IPR045242 -
Phco2g02262 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
Phco2g02262 298 CDD SynN 34 191 IPR006011 GO:0016020
Phco2g02262 298 SUPERFAMILY t-snare proteins 32 259 IPR010989 GO:0016020|GO:0016192
Phco2g02262 298 CDD SNARE_syntaxin1-like 203 264 - -
Phco2g02262 298 SMART tSNARE_6 199 266 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02262 Phco-Chr2 53264026 53265815 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02262 2 53264026 53265815 Phco6g00131 6 1257057 1259743 PCT