Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00130 ATGAACGACTTGATCTCCGGTTCCTTCTCTCGCTTCCGCAGCGAACGGGCTTCCCCGGATCGCCACCACGTCATTGAGATGTCCAGCGTCGTTGGTGACGGAGCCGGCGGCGTAAAAGTGAACCTCGACAAGTTCTTCGAGGACGTGGAGAGCGTGAAGGAGGAGCTGAAGGAGTTGGAGGGACTGGCGCAGAGTCTGAGGCGCAGCCACGAGCAGAGCAAGACGCTGCACAACGCCAACGCCGTCAGGGACCTCCGTTCCCGTATGGACGGTGACGTTTCGGTGGCTCTCAAGAAGGCCAAGCTCATCAAGCTCAAGCTCGAGGCTCTCGACCGCTCCAACGCCGCCAACCGGAACCTGCCAGGCTGCGGACCCGGTTCCTCTTCGGACCGGACCCGGACCTCCGTGGTGAACGGGCTGAAGAAGAAGCTGAAGGACTCCATGGAGAGCTTCAACGAGATTCGACAGCTCGTGTCGTCGGAGTACCGGGAGACAGTGCAGCGCCGCTACTTCACCGTCACCGGCGAGAATCCCGATGATAACACGCTCGATCTTTTGATCTCCACTGGTGAGAGTGAGACTTTCCTTCAGAAGGCCATTCAAGAGCAAGGCAGGGGTAGGATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGTTGGAGAAGAGTCTCAAGGAGTTGCACCAAGTGTTCCTTGACATGACAGTATTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCAATCGTTTGTGCACACTGGAACTGAGCAGTTGCAGACTGCACGAAAGCACCAGAAAAACACCAGAAAATGGACCTGTTATTGTATCATACTTCTTCTGGTGATCATCTTGGTTGTGGTGCTGTCCATTGTGAGGCCATGGGAAAGTAGCAGTAATAGCGGCAATGGTGGTGGTAACCAGTCTACACCAGCTCAAACACCACCTTCGCCTCCACCTCCTGTTTAG 1005 0.5473 MNDLISGSFSRFRSERASPDRHHVIEMSSVVGDGAGGVKVNLDKFFEDVESVKEELKELEGLAQSLRRSHEQSKTLHNANAVRDLRSRMDGDVSVALKKAKLIKLKLEALDRSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNEIRQLVSSEYRETVQRRYFTVTGENPDDNTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAQSFVHTGTEQLQTARKHQKNTRKWTCYCIILLLVIILVVVLSIVRPWESSSNSGNGGGNQSTPAQTPPSPPPPV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00130 334 CDD SNARE_syntaxin1-like 211 273 - -
Phco6g00130 334 SMART tSNARE_6 207 274 IPR000727 -
Phco6g00130 334 SUPERFAMILY t-snare proteins 41 267 IPR010989 GO:0016020|GO:0016192
Phco6g00130 334 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phco6g00130 334 Pfam SNARE domain 248 300 IPR000727 -
Phco6g00130 334 Coils Coil 42 69 - -
Phco6g00130 334 Gene3D - 208 305 - -
Phco6g00130 334 SMART SynN_4 37 163 IPR006011 GO:0016020
Phco6g00130 334 Coils Coil 212 232 - -
Phco6g00130 334 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Phco6g00130 334 PANTHER SYNTAXIN 65 295 IPR045242 -
Phco6g00130 334 MobiDBLite consensus disorder prediction 310 334 - -
Phco6g00130 334 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 169 - -
Phco6g00130 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Phco6g00130 334 CDD SynN 42 199 IPR006011 GO:0016020
Phco6g00130 334 Gene3D - 40 172 - -
Phco6g00130 334 FunFam Syntaxin 132 205 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00130 Phco-Chr6 1254151 1256318 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02261 2 53255035 53256412 Phco6g00130 6 1254151 1256318 PCT