Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02261 ATGCACGACTTGTTGTCCACCACCTCCTCCTGCCGCAGCTACCGATTTCCACCGTCGGATCACAGTGTCATCGAGATGGCCGGCGGCGACGATGACGACAACAGAGCAAAGAGTCTGGCCAAGTACTTCGGCAACGTGGAAGCAATAACGGAAGAGCTGAACAAGGTGGAGCAGTTGAAGCAGAGTCTGAAGAGGTCTCACGAACAAGGCAAGACTCTTCACAACGGTAAAGCCATGAAGGACCTTTGCTTCGCCATGGAAGCCAACGTGGAAGTCGCTCTCGAGACCGCGAAGCTCGTCAGGTTCCAGTTGGAGACGCTCGAACGCGCCAACGCCGATCACCGGAGCCTTCCCGGTCGTGGACCGGGTTCGTCCTCCGACCGGTCCCGAACCTCCGTGGTGATCTCCCTGAGGAAGAAGCTGAAGGATTCCTTGGACGGATTCAATGAACTGCGTCACCAGATTAACACGGAACACCGTGAGACCATTCAACGCCAATATTTCACCGTCACCGGCAGTAATCCCGACGACAGAACCCTCGACCTCTTGATCTCTTCCGGTGAGAGTGAGAATTTACTACAAAGAGCCATTGAAGAGCAGGGTAGGGGAGGAATTGAGGACATTATCAATGAAATAAAAGAGAGGCATGATGGGATGAAAGAGTTGGAGAAGAATCTGAAGGAGTTGCATCAGGTGTTCCTTGACATGACAGTGCTGGTTAAATCTCAAGGGGAGCAATTGGATGATATAGAAAACCAAGTGGCAAGAGCAAACTCCTTCGTCAGGAATGGGACTCAGAAGCTGGAAACTGCAAGGAAGGAGCAGAAAAACCACCGCAAGTGGTGCTACTGTGCTATTATCCTTCTTGTAGCAATTGTATTGTTTGTGGTGCTCTTTTTCGTAAGACCATGGGAAAAGTAA 921 0.5103 MHDLLSTTSSCRSYRFPPSDHSVIEMAGGDDDDNRAKSLAKYFGNVEAITEELNKVEQLKQSLKRSHEQGKTLHNGKAMKDLCFAMEANVEVALETAKLVRFQLETLERANADHRSLPGRGPGSSSDRSRTSVVISLRKKLKDSLDGFNELRHQINTEHRETIQRQYFTVTGSNPDDRTLDLLISSGESENLLQRAIEEQGRGGIEDIINEIKERHDGMKELEKNLKELHQVFLDMTVLVKSQGEQLDDIENQVARANSFVRNGTQKLETARKEQKNHRKWCYCAIILLVAIVLFVVLFFVRPWEK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02261 306 FunFam Syntaxin 132 202 302 - -
Phco2g02261 306 CDD SynN 39 196 IPR006011 GO:0016020
Phco2g02261 306 Coils Coil 46 69 - -
Phco2g02261 306 ProSitePatterns Syntaxin / epimorphin family signature. 215 254 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phco2g02261 306 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Phco2g02261 306 MobiDBLite consensus disorder prediction 113 132 - -
Phco2g02261 306 Coils Coil 205 229 - -
Phco2g02261 306 SUPERFAMILY t-snare proteins 40 264 IPR010989 GO:0016020|GO:0016192
Phco2g02261 306 CDD SNARE_syntaxin1-like 209 270 - -
Phco2g02261 306 Pfam SNARE domain 245 297 IPR000727 -
Phco2g02261 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Phco2g02261 306 Gene3D - 34 169 - -
Phco2g02261 306 SMART SynN_4 34 160 IPR006011 GO:0016020
Phco2g02261 306 SMART tSNARE_6 204 271 IPR000727 -
Phco2g02261 306 Gene3D - 205 302 - -
Phco2g02261 306 PANTHER SYNTAXIN 47 290 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02261 Phco-Chr2 53255035 53256412 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02261 2 53255035 53256412 Phco6g00130 6 1254151 1256318 PCT