Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00101 ATGCCTCCTCCTTCTCCTCTTATTTTCTCTATACTCTGTTTTCTCTCTGTTATCATCTTCACTTCATCATCCACACCCAACACCATCACCCTCCCTCTCTCCCACTTATTCACCACCCACCCTTCTTCACACCCATTCCACACCCTCAAACTCGCTGTTTCAACTTCCATCACAAGAGCCCACCACCTCAAAAATCACCAACCCAACCCACTCAAAACCCAAATCCACCCTAAAAGCTACGGAGGATACTCCATCGACCTCAATTTCGGAACCCCACCTCAAACCTTCTCCTTTATTCTCGACACCGGAAGCACCCTCGTCTGGCTCCCATGCTCTTCCCACTACCTGTGCTCAAATTGCAACTCCTTCCACAACACACCCAAATCTTTCATCCCCAAAAACTCGTCTTCCTCCAAATTCGTAGGCTGCACCAACCCCAAATGCACGTGGGTCTTCGGCACCAGCGTTGAATCGCGTTGTTGCAAGCAAAACAGTGCCACCGGTAACTGTTCACAGACATGCCCTGCTTACACCGTCCAATACGGGCTGGGCTCAACCGCGGGCCTTCTCCTCTCGGAAAATCTCAACTTTCCCGGGAAAATCCTCCCCGATTTTCTCGTCGGCTGCTCCATCATCTCCGTCTACCAGCCAGCCGGAATCGCCGGCTTCGGCCGCGGTCCGGAGTCCCTGCCATCGCAGATGAACCTCACCGGATTCTCTTACTGCTTACTCTCACACCAGTTCGACGACTCGCCGGAAACCAGCGACCTGGTCTTGCACACTTCCTCCGACGACGACGACAAAAGAACAAACGGCGTCAGCTACACGCCGTTTCGGAAAAACCCGTCCAGCAAAAACCCCGCGTTCGGTGCGTACTATTACCTCACTCTCAGGAGAATCATCGTTGGGGAGAAGCGCGTCCGGGTTCCGAAGAGGCTTCTAGAGCCGGACGTCGACGGTAACGGTGGGTCTATCGTGGACTCGGGGTCCACCTTCACGTTCATGGAGAGGCCAATTTTTGATTTGGTGGCACAGGAGTTTGCGAAGCAGGTGAACTACACGCGCGCGAGGGAGATGGAGAAAAAATCCGGGCTGAGTCCGTGTTTTGTGGTGTCTGGAACGGCGACGTTTCCAGAGCTTCGGTTTGAGTTCAGGGGCGGCGCGAAGATGATTCTGCCGCTGTCGAATTATTTCTCGTTGTTCGGGAAATCCGACGTGGCGTGTTTGACTATTGTGTCTGATGACGTGGCGGGTCCCGGCGTGGCGGCTGGGCCCGCTGTGATATTGGGGAACTATCAGCAGCAGAATTTTTACGTTGAGTATGACTTGGGAAACGAGAGGTTCGGTTTTCGGAGTCAGAGTTGCAAAACGCGCGTTTAA 1380 0.5362 MPPPSPLIFSILCFLSVIIFTSSSTPNTITLPLSHLFTTHPSSHPFHTLKLAVSTSITRAHHLKNHQPNPLKTQIHPKSYGGYSIDLNFGTPPQTFSFILDTGSTLVWLPCSSHYLCSNCNSFHNTPKSFIPKNSSSSKFVGCTNPKCTWVFGTSVESRCCKQNSATGNCSQTCPAYTVQYGLGSTAGLLLSENLNFPGKILPDFLVGCSIISVYQPAGIAGFGRGPESLPSQMNLTGFSYCLLSHQFDDSPETSDLVLHTSSDDDDKRTNGVSYTPFRKNPSSKNPAFGAYYYLTLRRIIVGEKRVRVPKRLLEPDVDGNGGSIVDSGSTFTFMERPIFDLVAQEFAKQVNYTRAREMEKKSGLSPCFVVSGTATFPELRFEFRGGAKMILPLSNYFSLFGKSDVACLTIVSDDVAGPGVAAGPAVILGNYQQQNFYVEYDLGNERFGFRSQSCKTRV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00101 459 SUPERFAMILY Acid proteases 79 455 IPR021109 -
Phco6g00101 459 Pfam Xylanase inhibitor C-terminal 293 451 IPR032799 -
Phco6g00101 459 ProSiteProfiles Peptidase family A1 domain profile. 83 451 IPR033121 -
Phco6g00101 459 CDD pepsin_A_like_plant 82 455 IPR034161 -
Phco6g00101 459 Pfam Xylanase inhibitor N-terminal 83 251 IPR032861 -
Phco6g00101 459 MobiDBLite consensus disorder prediction 255 277 - -
Phco6g00101 459 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 98 109 IPR001969 GO:0004190|GO:0006508
Phco6g00101 459 Gene3D Acid Proteases 65 253 IPR021109 -
Phco6g00101 459 PANTHER OS07G0603500 PROTEIN-RELATED 38 455 - -
Phco6g00101 459 FunFam Aspartic proteinase nepenthesin-2 60 257 - -
Phco6g00101 459 FunFam Aspartyl protease family protein 264 458 - -
Phco6g00101 459 Gene3D Acid Proteases 260 459 IPR021109 -
Phco6g00101 459 PRINTS Pepsin (A1) aspartic protease family signature 427 442 IPR001461 GO:0004190|GO:0006508
Phco6g00101 459 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Phco6g00101 459 PRINTS Pepsin (A1) aspartic protease family signature 324 335 IPR001461 GO:0004190|GO:0006508
Phco6g00101 459 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00101 Phco-Chr6 1016666 1018045 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00101 6 1016666 1018045 Phco6g00101 6 1016666 1018045 ECH
Phco2g02235 2 53020133 53021533 Phco6g00101 6 1016666 1018045 PCT