Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02235 ATGGCTCTTCCTTACATTATTCTCTTATCTCTAACTCTCATCTATCAGGCTGCATTCACTTCCTCCGCCTTCACCCCCAACACCATCACTCTCCCTCTCTCGCCTCTACTCACCAAACCCCAATCCTCGGATCCCTTCCACTCTCTCAAACTCGCCGCTTCAGCTTCTCTAACCCGGGCCCACCACCTCAAACACCGCCTCAATGCCCCCTCCGTCGCCACAACCCAAGTCTACCCCAAAAGCTACGGTGGCTACTCCATAGATCTCAACTTCGGAACCCCACCCCAAACCTCCCCCTTCGTTCTCGACACAGGAAGTAGCCTCGTCTGGTTCCCCTGCACCTCCCGCTACCTCTGCTCCCACTGTCTCTTCCCAAACATCGACCCCACCAAAATCCACACCTTCATTCCCAAAAACTCCTCCACCTCCAGACTTCTCGGTTGCACAAACCCCAAATGCGGTTACCTCTTCGGCTCCGACCTTCAATCTCGCTGCCCCCAATGCAAACCCAATTCCCAAAACTGTTCCCTCACTTGTCCCCCCTACATTATCCAATACGGTTTGGGATCCACCGCGGGTTTCTTACTCCTCGACAATCTCAATTTCCCCGAAAAAATTGTTCCCCAATTTCTCGTCGGTTGCTCCATCCTCTCCATCCGCCAACCCTCCGGCATCGCCGGCTTCGGACGCGGCCAAGAGTCTCTCCCTTCGCAAATGGCACTCAAGAGATTCTCTTACTGCTTACTTTCCCACAACTTCGACGACTCCACGGAAAACAGCGACCTTGTTTTACAAATTAGCTCCACCGGCGACACCAAAACCAACGGCCTCAGCTACACGCCGTTTCACCCCAACCCCTCTGCCAACAACCCCGCGTTCCAGGAATATTACTATCTTAGCCTCCGCAAGGTCATTGTCGGGGGCAAGAACGTTAAGATTCCGCTTAGTTTTTTGGAGCCCGGCTCTGACGGTAACGGCGGCACCATCGTGGACTCTGGATCCACCTTCACGTTCATGGAACGACCCGCTTATGATTTGGTGGTCAAAGAGTTTGTGAAGCAGTTGGGGAATTATTCCAGGGCCGAGGACGTGGAGGCTCAATCTGGGTTAGGTCCCTGTTTTAATATTTCCGGCGCCAAGACCGTGAATTTCCCGAAGTTTACTTTGCAATTCAAAGGCGGCGCAAAAATGACGCTGCCGGTGGAAAATTATTTCTCGTTGATAGGCGATTCGGAGGTGGTGTGTCTGACCGTTGTCTCTGACGGTGGCGCCGGTCCGGTGACGACGTCCGGTCCCGCCATCATTTTGGGGAACTACCAGCAGCAAAATTTCCACATTGAATATGATTTGGAGAATGAGAGGTTCGGGTTCGGTCCTCAGAGTTGCAAAAGGAAAGCTTAG 1401 0.5296 MALPYIILLSLTLIYQAAFTSSAFTPNTITLPLSPLLTKPQSSDPFHSLKLAASASLTRAHHLKHRLNAPSVATTQVYPKSYGGYSIDLNFGTPPQTSPFVLDTGSSLVWFPCTSRYLCSHCLFPNIDPTKIHTFIPKNSSTSRLLGCTNPKCGYLFGSDLQSRCPQCKPNSQNCSLTCPPYIIQYGLGSTAGFLLLDNLNFPEKIVPQFLVGCSILSIRQPSGIAGFGRGQESLPSQMALKRFSYCLLSHNFDDSTENSDLVLQISSTGDTKTNGLSYTPFHPNPSANNPAFQEYYYLSLRKVIVGGKNVKIPLSFLEPGSDGNGGTIVDSGSTFTFMERPAYDLVVKEFVKQLGNYSRAEDVEAQSGLGPCFNISGAKTVNFPKFTLQFKGGAKMTLPVENYFSLIGDSEVVCLTVVSDGGAGPVTTSGPAIILGNYQQQNFHIEYDLENERFGFGPQSCKRKA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02235 466 PANTHER OS07G0603500 PROTEIN-RELATED 35 462 - -
Phco2g02235 466 FunFam Aspartic proteinase nepenthesin-2 60 262 - -
Phco2g02235 466 FunFam Aspartyl protease family protein 268 465 - -
Phco2g02235 466 CDD pepsin_A_like_plant 84 462 IPR034161 -
Phco2g02235 466 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Phco2g02235 466 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Phco2g02235 466 PRINTS Pepsin (A1) aspartic protease family signature 434 449 IPR001461 GO:0004190|GO:0006508
Phco2g02235 466 Gene3D Acid Proteases 69 262 IPR021109 -
Phco2g02235 466 SUPERFAMILY Acid proteases 80 462 IPR021109 -
Phco2g02235 466 Pfam Xylanase inhibitor C-terminal 297 458 IPR032799 -
Phco2g02235 466 Pfam Xylanase inhibitor N-terminal 85 262 IPR032861 -
Phco2g02235 466 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Phco2g02235 466 Gene3D Acid Proteases 264 466 IPR021109 -
Phco2g02235 466 ProSiteProfiles Peptidase family A1 domain profile. 85 458 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02235 Phco-Chr2 53020133 53021533 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02235 2 53020133 53021533 Phco2g02235 2 53020133 53021533 ECH
Phco2g02235 2 53020133 53021533 Phco6g00101 6 1016666 1018045 PCT