Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01429 ATGTCTGTGAACAATAATAACCCTTCTAAGGGCATTGGGGCCTCTTCCTCATCCTTTGGCAATGCTGGAATATCCTCCAATTCTATACCTACGAACCATGGTTTTTCACAGTCCCAAGGACAAGGCCAGATTCCCGTTGGTTTTCAAGGGCAGTTTCCACTGTCACAGGCTCATGCTATTGTCCAAGCTCAGTCCAAGGCCCAGGCTCAGGCTCAGGCTCATGCCCAAGCAGCAGCTGCAGCCCATGCTCAAATCCAGGCTCATTTGCAAGCACAGGGTTTGAGTCTTAATCAGAACCAAGGTGGTGGTTTGGGGCTGTCGTCGCCTATTTCCACACCGGGTAATGCTAGTGGGAAACGGATCCCTTTGAAACCCCCAATTCGGCCAGTTGGATTTTCCCCTCCCAACAGCTTCTCGCCTTTGAGACCGATGGAGCTCACACCTGCTTCTCGGAGGAAGAAGCAGAAGCTTCCGGAGAAACAGCTGCAAGATAAAGTGGCAGCTATACTGCCCGAGTCTGCCCTGTACACACAGCTTCTCGAATTTGAGTCTCGTGTTGATGCAGCACTTGCTAGAAAGAAGGCTGACATCCAGGAAGCGCTCAAAAACCCACCCTGTATTCAGAAAACCCTTCGCATCTATGTATTTAACACTTTTGCTAATCAAATTCGCACAATTCCAAAGAAGCCGAGTGCAGAGCCTCCAACCTGGACGCTGAAGATAGTTGGAAGGATATTGGAAGATGGTGTAGACCCTGATCAGCCAGGAGTGGTTCAGAAGTCGACTCCTTTGTATCCCAAGTTTTCAGCTTTCTTCAAAAGAGTAACCATTTCTTTAGATCAGAGACTTTATCCAGATAATCATATTATTATGTGGGAGAATGCTCGATCGCCTGCTCCACATGAAGGTTTTGAAGTAAAGAGGAAAGGGGATAAAGAGTTTACAGTGAATATACGGCTGGAAATGAATTATGTACCCGAGAAGTTTAAGCTTTCGCCTGCTTTGACAGAGGTTCTTGGTATTGAGGTTGATACCCGCCCAAGAATTGTTGCTGCGATCTGGCACTATGTAAAGGCCAGGAAGTTGCAAAACCCTAATGACCCTTCTTTCTTTCACTGTGATCAGCCTCTTCAGAAAGTATTTGGAGAAGAAAAGATGAAGTTTACAATGGTTTCGCAGAAAATATCTTCACATTTGTTCCCTCCGCAGCCTATACTTTTGGAACACAAGATCAAGCTATCGGGAAACAGTCCAGCTGGGACTGCTTGTTATGATGTGATGGTTGATGTTCCTTTCCCAATTCAGAGGGAGTTGTCTGCTTTATTGGCTAATGTGGAAAAGAACAAAGAGATTGAGACATGTGATGAAGCAATATGTGGAATCATTAGAAAAATTCATGAGCACAGAAGGAGACGGTCATTCTTTCTTGGTTTCAGTCAATCGCCAGTAGAATTTATTAATGCATTGATTGAATCTCAAAGCAGGGATCTGAAACTTGTTTCCGGAGAACCTAGTCGCAATGCAGAAAAAGAGCGCAGATCAGATTTCTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGATATCTGAATCGCAAACCAGCTGTGGGAAGTGATGCACCAGGAAGCACATGA 1635 0.4532 MSVNNNNPSKGIGASSSSFGNAGISSNSIPTNHGFSQSQGQGQIPVGFQGQFPLSQAHAIVQAQSKAQAQAQAHAQAAAAAHAQIQAHLQAQGLSLNQNQGGGLGLSSPISTPGNASGKRIPLKPPIRPVGFSPPNSFSPLRPMELTPASRRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPSAEPPTWTLKIVGRILEDGVDPDQPGVVQKSTPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNSPAGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRSFFLGFSQSPVEFINALIESQSRDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVGSDAPGST 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01429 544 MobiDBLite consensus disorder prediction 104 144 - -
Phco5g01429 544 ProSiteProfiles SWIB/MDM2 domain profile. 324 401 IPR003121 -
Phco5g01429 544 Pfam SWIB/MDM2 domain 328 399 IPR003121 -
Phco5g01429 544 MobiDBLite consensus disorder prediction 1 48 - -
Phco5g01429 544 SUPERFAMILY SWIB/MDM2 domain 319 409 IPR036885 -
Phco5g01429 544 Gene3D SWIB/MDM2 domain 321 405 IPR036885 -
Phco5g01429 544 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 148 498 - -
Phco5g01429 544 CDD SWIB_like 331 399 - -
Phco5g01429 544 SMART swib_2 325 404 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01429 Phco-Chr5 49728642 49730741 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phco5g01429 SWIB 4.4e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01058 2 16022321 16024149 Phco5g01429 5 49728642 49730741 PCT