Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01058 ATGTCTATGTACAACAACTACAACTCTATGAAGCCCCTTGGGGCTTCTTCCTCCGGCACCCAACACCCCCAAATTGCGCCGGGCCAGTACCCTCAGTCCCAGGCCCACGCCATCGTCCAAGCCCAGTTTCAGGCCCAGCTCCAAGCCCACGGGCTTTCCTTCGCCCCCAACGCCAAACGTTTCCCTCCAAAACCCCCCATTCATACCGCCACGCCGCTTAAACTAACGGAATCCGTGCCCGGGCCACGAAGGAAGAAGCACAAGCAAAATGAGAAACAGCTTCCGGAGAAAGCCTTGGCAATTCTCCCAGAGTCGGCACTCTACGCGCAGCTCCTGGACGTGGAGGTGCGTGTGGACGCTGCACTCGCTAGAAAGAAGGTTGATATTCAAGAAGCAATGAAAAACCCACCCTTCATGCAGAAAACCCTTCGAATTTTCGTGTTTAACACGTTTGCGAACCAGAATGTGGATTCATCCGCTCCCACGTGGACTCTTAAGATTGTTGGGAGGATTTTGGAAGATGGTGAAGAACCTGAACAAGCTGGAGTTGCTGCTCACAGGGTGCCACCTTTGTACCCGAAATTCTCTGCCTTTTTCAAAAGGGTAACGATTTCCCTCGACAAGAGGCTGTATCCAGAGAACCATGTCATCACGTGGGAGAATTCGCGGTCCTCTGCCACTCATGAAGGTTTTGAGGTGAAGAGGAAAGGGGATAAGGAGTTCTCTGCGCAGATTCGGTTGGAGATGAATTACGTGCCAGAGAAGTTTATGCTGTCGCCTGTGTTGAGGGAATTGCTTGGTATTCAGGTTGACACGCGGGCAAGGATTGTTTCAGCTATATGGCATTATGTGAAGGCGAGGAAGTTGCAGAACCAGAATGATCCTTCGTACTTTCACTGCGATCTGGCTCTTCAGAAGGTGTTTGGGGAGGATAAGGTGAGGTTCTCGATGGTTTCGCAGAAGATATCTCAGCATTTGTTTCCTCCTCAGGTTATTCTTTTGGAACATATGATCAAGCTCTCGGGGAATAGTCCGGTTGGGTCTGCTTGTTATGATGTGATGGTTGATGTTCCTTTTCCCATGCAGAGGGAATTGAATGCTCTGGTGGCCAATGTGGAAAGGAACAAAGAGATTGATGCCTGTGATGAATCCATATGCGGAATCATTAGAAAAATACACGAGCACCGCAGGAGGCGAGCATTCTTTGTTGGTTTTAGTCAATCCCCTCTGGAATTTATTAAGGCCTTGGTTGAATCTCAAAACAAGGATCTCAAAGTTTTACTTGGAGAATCTGGTCACAATGCTGAAAAGGAGCGCAAATCAGATTTCTTTAAGCAACCATGGGTTGAGGATGCTATTGTTCGCTATTTGAATCGCAAACCAGCAGCAGGAAGCAATGCCCCAGGGAGCTCATGA 1416 0.4901 MSMYNNYNSMKPLGASSSGTQHPQIAPGQYPQSQAHAIVQAQFQAQLQAHGLSFAPNAKRFPPKPPIHTATPLKLTESVPGPRRKKHKQNEKQLPEKALAILPESALYAQLLDVEVRVDAALARKKVDIQEAMKNPPFMQKTLRIFVFNTFANQNVDSSAPTWTLKIVGRILEDGEEPEQAGVAAHRVPPLYPKFSAFFKRVTISLDKRLYPENHVITWENSRSSATHEGFEVKRKGDKEFSAQIRLEMNYVPEKFMLSPVLRELLGIQVDTRARIVSAIWHYVKARKLQNQNDPSYFHCDLALQKVFGEDKVRFSMVSQKISQHLFPPQVILLEHMIKLSGNSPVGSACYDVMVDVPFPMQRELNALVANVERNKEIDACDESICGIIRKIHEHRRRRAFFVGFSQSPLEFIKALVESQNKDLKVLLGESGHNAEKERKSDFFKQPWVEDAIVRYLNRKPAAGSNAPGSS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01058 471 MobiDBLite consensus disorder prediction 13 33 - -
Phco2g01058 471 SUPERFAMILY SWIB/MDM2 domain 246 336 IPR036885 -
Phco2g01058 471 MobiDBLite consensus disorder prediction 55 92 - -
Phco2g01058 471 Pfam SWIB/MDM2 domain 255 326 IPR003121 -
Phco2g01058 471 CDD SWIB_like 258 326 - -
Phco2g01058 471 ProSiteProfiles SWIB/MDM2 domain profile. 251 328 IPR003121 -
Phco2g01058 471 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 85 425 - -
Phco2g01058 471 SMART swib_2 252 331 IPR019835 -
Phco2g01058 471 Gene3D SWIB/MDM2 domain 248 331 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01058 Phco-Chr2 16022321 16024149 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phco2g01058 SWIB 3.4e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01058 2 16022321 16024149 Phco2g01058 2 16022321 16024149 ECH
Phco2g01058 2 16022321 16024149 Phco5g01429 5 49728642 49730741 PCT