Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01421 ATGAATCTTGTCTTGCACTTTTCTCCAAAACCACTCGAGGGCATTGTTGGCAGAACATTACTGAGCATGCGAGCAAAATCGGCTGCAAATATTTCACTACTGCCAACCTTCAACCAGTCCCAAGGACTAACAAAGACAATTGATGCCTTAGAGTTGGGAATTCAGTCACAAACTATAGAAGCTCAACCATTTTCCATGCATAACAAGTCCTTAGACGACGGTGCTGCGCTCTTAACGGGTCATACAAGAAAGTGTGATCAGAATCATAATTTGAAACGTTGCATGATGGACAAGGTGAGTCAATATGCGTGTGTTTTCAACCACTTTGACGAGAATGGAGACGGGAAAATATCAGCGTCGGAGTTGCAGCAATGCGTGGAGGCGATCAGTGGGAAGTTGTCGTGGGCGGAGGCGGAGACCTTGGTGGAGGTTCTAGACTCAGACAAGGACGGGCTGGTGGGGTTGGATGATTTTGTGAGGTTTGTGGAGGAAGTGGAAGAGGAAGAGAAGGTGAAAGACCTAAGAGAGGCCTTTAAGATGTATGAAATGGAGGGGTGTGGTTGCATCACACCAAAGAGTCTCAAGAGAATGCTTGGGAGATTGGGGGAGTGCAAGAGCATAGATGAGTGTCAAGGAATGATAGCTAGATTTGACCTTAATGGGGATGGGGTCCTCACTTTTGATGAATTTAGGGTTATGATGTTGTAA 708 0.459 MNLVLHFSPKPLEGIVGRTLLSMRAKSAANISLLPTFNQSQGLTKTIDALELGIQSQTIEAQPFSMHNKSLDDGAALLTGHTRKCDQNHNLKRCMMDKVSQYACVFNHFDENGDGKISASELQQCVEAISGKLSWAEAETLVEVLDSDKDGLVGLDDFVRFVEEVEEEEKVKDLREAFKMYEMEGCGCITPKSLKRMLGRLGECKSIDECQGMIARFDLNGDGVLTFDEFRVMML 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01421 235 ProSiteProfiles EF-hand calcium-binding domain profile. 97 132 IPR002048 GO:0005509
Phco5g01421 235 Pfam EF-hand domain pair 102 162 IPR002048 GO:0005509
Phco5g01421 235 Pfam EF-hand domain pair 173 234 IPR002048 GO:0005509
Phco5g01421 235 ProSitePatterns EF-hand calcium-binding domain. 218 230 IPR018247 -
Phco5g01421 235 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 172 234 - -
Phco5g01421 235 ProSiteProfiles EF-hand calcium-binding domain profile. 133 168 IPR002048 GO:0005509
Phco5g01421 235 ProSiteProfiles EF-hand calcium-binding domain profile. 205 235 IPR002048 GO:0005509
Phco5g01421 235 CDD EFh 105 161 IPR002048 GO:0005509
Phco5g01421 235 SMART efh_1 101 129 IPR002048 GO:0005509
Phco5g01421 235 SMART efh_1 209 235 IPR002048 GO:0005509
Phco5g01421 235 SMART efh_1 137 165 IPR002048 GO:0005509
Phco5g01421 235 SMART efh_1 173 201 IPR002048 GO:0005509
Phco5g01421 235 CDD EFh 173 234 IPR002048 GO:0005509
Phco5g01421 235 SUPERFAMILY EF-hand 99 235 IPR011992 -
Phco5g01421 235 Coils Coil 164 184 - -
Phco5g01421 235 ProSitePatterns EF-hand calcium-binding domain. 146 158 IPR018247 -
Phco5g01421 235 Gene3D - 81 167 - -
Phco5g01421 235 ProSiteProfiles EF-hand calcium-binding domain profile. 169 204 IPR002048 GO:0005509
Phco5g01421 235 FunFam Calcium-binding protein CML38 165 235 - -
Phco5g01421 235 ProSitePatterns EF-hand calcium-binding domain. 110 122 IPR018247 -
Phco5g01421 235 Gene3D - 168 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01421 Phco-Chr5 49616199 49620712 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01075 2 16849245 16849667 Phco5g01421 5 49616199 49620712 PCT