Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01075 ATGGACAAGCTAAGCCAATATGAACGTGTATTCAAGCAGTTTGACGAGAATGGTGACGGCAAGATATCGGCGTGGGAGCTGCAACAATGCATGGAGGGCATGGGTGAGGAGTTGTCTGCTGAGGATGCGGCGGCGACTGTGACTATGGTGGACGCCGACGGGGATGGGGTGGTGGGGTTTGATGATTTTGTGAGGTTTGTGGAGGGAGGGAAAGAGGAAGAGAAAGAGAATGACCTAAAAGAGGCTTTTAGGATGTATGAGATGGAAGAGAGTGGTTGCATCACACCGAGAAGTCTTAAAATGATGCTTAGTAGGTTGGGTGAATCTACGAGTATAGATGAGTGTAAAGTTATGATAGCTAGATTTGATCTTAATAGAGATGGGGTGCTCACTTTCGATGAATTTAAGGTCATGATGTTGTAA 423 0.461 MDKLSQYERVFKQFDENGDGKISAWELQQCMEGMGEELSAEDAAATVTMVDADGDGVVGFDDFVRFVEGGKEEEKENDLKEAFRMYEMEESGCITPRSLKMMLSRLGESTSIDECKVMIARFDLNRDGVLTFDEFKVMML 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01075 140 Gene3D - 1 70 - -
Phco2g01075 140 CDD EFh 6 67 IPR002048 GO:0005509
Phco2g01075 140 CDD EFh 78 139 IPR002048 GO:0005509
Phco2g01075 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Phco2g01075 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Phco2g01075 140 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Phco2g01075 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Phco2g01075 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Phco2g01075 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Phco2g01075 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Phco2g01075 140 Pfam EF-hand domain pair 90 139 IPR002048 GO:0005509
Phco2g01075 140 SMART efh_1 78 106 IPR002048 GO:0005509
Phco2g01075 140 SMART efh_1 42 70 IPR002048 GO:0005509
Phco2g01075 140 SMART efh_1 114 140 IPR002048 GO:0005509
Phco2g01075 140 SMART efh_1 6 34 IPR002048 GO:0005509
Phco2g01075 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Phco2g01075 140 SUPERFAMILY EF-hand 3 139 IPR011992 -
Phco2g01075 140 FunFam Calcium-binding protein CML38 70 140 - -
Phco2g01075 140 PANTHER CALCIUM BINDING PROTEIN 74 139 - -
Phco2g01075 140 Gene3D - 71 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01075 Phco-Chr2 16849245 16849667 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01075 2 16849245 16849667 Phco2g01075 2 16849245 16849667 ECH
Phco2g01075 2 16849245 16849667 Phco5g01421 5 49616199 49620712 PCT