LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco5g01301	ATGAGTTCCTACAAGTCATCGCCATCTTCCTCCAAGACCAAAAAGAAGCAAACCACAACACAAGACCATCAACAACAACATGAAACGGTTTGGGGAGGGAGGTACCTTGGTGTGAGAAGGAGGCCATGGGGAAGGTATGCGGCGGAAATTCGCGACCCTTCCACCAAGGAGAGACATTGGTTGGGCACGTTTGATACAGCAGAAGAAGCTGCTCTGGCTTACGACAGAGCCGCCCGTTCCATGCGCGGGTCACGTGCCCGAACCAATTTCGTTTATCCGGATACTCCGGCGGGTTCCTCCGTCACCACCATCCTCTCTCCTGATGAACAAACTCAAACCCAAATTCAAATCCATCAGGTCCAAGAAGACCTCTCGTCTTTACTAAACCCAAACCTGTTTTCACAACCTGACCCAAACCCGCCGTTTTCCTTGGGCGGATACTCAGGTGTTACGAACACTCCCACGTTTTCTTCCACCGAAGTTGTCTCATCCGGTGGCTATAACTATAATTATGGTTACACCGAAGGAGGAAGCAACGTGGAAGATTCACATTCACATTCACATTTTAATCTCTTTGATGACGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATGGCCTATGAAACGGGCCATGGGTTTTATGGAGACGGCGTCGGGTTTTCGGATCCAAGTTATAGTTTGACTGATACCGGATCGGGTTACCCGTTTCCGGGGTTTGAATCGGGTGATTACGTGGTGCATAGTCCTCTTTTTAGTGCAATGCCACCAGTGTCAGATAACGTGGCAATGGAGGGTTTTGATCTGGGAAACTCTTCTTATTTCTTCAGAAATTAG	849	0.4912	MSSYKSSPSSSKTKKKQTTTQDHQQQHETVWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPAGSSVTTILSPDEQTQTQIQIHQVQEDLSSLLNPNLFSQPDPNPPFSLGGYSGVTNTPTFSSTEVVSSGGYNYNYGYTEGGSNVEDSHSHSHFNLFDDGETQLPPLPPDITSSMAYETGHGFYGDGVGFSDPSYSLTDTGSGYPFPGFESGDYVVHSPLFSAMPPVSDNVAMEGFDLGNSSYFFRN	282

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco5g01301	282	ProSiteProfiles	AP2/ERF domain profile.	34	91	IPR001471	GO:0003700\|GO:0006355
	Phco5g01301	282	MobiDBLite	consensus disorder prediction	1	15	-	-
	Phco5g01301	282	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	16	119	-	-
	Phco5g01301	282	MobiDBLite	consensus disorder prediction	1	33	-	-
	Phco5g01301	282	PRINTS	Ethylene responsive element binding protein signature	35	46	IPR001471	GO:0003700\|GO:0006355
	Phco5g01301	282	PRINTS	Ethylene responsive element binding protein signature	57	73	IPR001471	GO:0003700\|GO:0006355
	Phco5g01301	282	FunFam	Ethylene-responsive transcription factor 2	34	92	-	-
	Phco5g01301	282	Pfam	AP2 domain	35	83	IPR001471	GO:0003700\|GO:0006355
	Phco5g01301	282	Gene3D	AP2/ERF domain	33	92	IPR036955	GO:0003700\|GO:0006355
	Phco5g01301	282	SMART	rav1_2	34	97	IPR001471	GO:0003700\|GO:0006355
	Phco5g01301	282	SUPERFAMILY	DNA-binding domain	34	91	IPR016177	GO:0003677
	Phco5g01301	282	CDD	AP2	34	90	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco5g01301	Phco-Chr5	47768539	47769387	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Phco5g01301		AP2	1.8e-13	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g01092	2	20737061	20737756	Phco5g01301	5	47768539	47769387	PCT