Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01092 ATGAACCCGCGAACGACGTCGTCATCGTCGAAGACGAAGAAGAAGCAAACGGCACCAGAGCCGCACCAAACGGCATGGGGCGGGAGGTACCTCGGCGTGCGGCGGAGGCCGTGGGGACGGTACGCGGCGGAGATTCGCGACCCTTCCACCAAGGAGCGGCACTGGCTGGGCACCTTCGACACCGCCGACGAGGCCGCACTCGCCTACGACCGAGCTGCACGTGCCATGCGCGGCTCACGTGCACGCACGAACTTCGTCTACGCCGACACCACTCCCGGCTCATCCCTCACCCTCATCATCTCCCCCGACCAACAACCCCTCCCTCAACCCGACCCGGTTCTAACCCTCGACCCGTTTTCCCTCCTCGGGTTTCCCTCCGCTTCTTTCTCCTACAATGAAAATGCCTCGGCCAGCGTGGCCGCTTCCGACTTCAGCCAACAATCGTTTTTCGAAAACAATAATAACAATAATTATTATAATAATAATAACAATGATAATGAGAAGAGTGGGAGCACGGTGGAGCTTCCTCCATTGCCACCGGATATTACAAGTTCCATGGGTTACGAGATGGAACATGAGAGTGGTGGATTTTATTGGGAGGCTAGTCCAATGTTTAGCGCAATGTCAACAGTGTCAGAGAATGTGGGTGCAGAGTCTCAAGTTTTTGAGTTGGGCAGCTCCTCCTATTTCCACTGA 696 0.556 MNPRTTSSSSKTKKKQTAPEPHQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTTPGSSLTLIISPDQQPLPQPDPVLTLDPFSLLGFPSASFSYNENASASVAASDFSQQSFFENNNNNNYYNNNNNDNEKSGSTVELPPLPPDITSSMGYEMEHESGGFYWEASPMFSAMSTVSENVGAESQVFELGSSSYFH 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01092 231 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Phco2g01092 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 160 - -
Phco2g01092 231 MobiDBLite consensus disorder prediction 153 171 - -
Phco2g01092 231 FunFam Ethylene-responsive transcription factor 2 29 87 - -
Phco2g01092 231 MobiDBLite consensus disorder prediction 153 176 - -
Phco2g01092 231 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Phco2g01092 231 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Phco2g01092 231 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Phco2g01092 231 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Phco2g01092 231 MobiDBLite consensus disorder prediction 1 29 - -
Phco2g01092 231 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Phco2g01092 231 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Phco2g01092 231 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01092 Phco-Chr2 20737061 20737756 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g01092 AP2 8.5e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01092 2 20737061 20737756 Phco2g01092 2 20737061 20737756 ECH
Phco2g01092 2 20737061 20737756 Phco5g01301 5 47768539 47769387 PCT