Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01292 ATGGGCGCCAACCGAAGAAAGAGCGAGGAACCGGAGGTGACGATGGATCACGTGTTGCTAGCATCAGGTGAAAGCGCGCCTCAGAGAGAGGCGCGGATTCGCGCGCTCTTTGGGTTCTTCGACGAGCAGGGGCGCGGGTACTTGGACCACGCGCTGATCGAGAGGGGGCTTGCGGCGCTGGGAATGCCCTCGGAGAGTGACTACGCGCGGGACTTGCTCGGCGCATGCGACGCAGACAAGGACGGGCGAGTGGAGTACGGAGAGTTCAAGAGGTACATGGAGGAGAAAGAGGTGGAACTGTATCGGATATTTCAGGCCATCGATGTGGAGCACAGTGGGTGTATTTCGCCCGAGGAGCTCTGGCACGCGCTTGTGAGAGCAGGGATTCAGATTGATGATGTGGAACTTGCTCGATTTGTTGAGCGTGTTGACAAGGATCATAATGGGGTTATAACATTTGGAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACCATTGAGAACATATATCATTATTTGGAGCGTGTATGCCTAGTTGATATTGGGGAACAAACTGTAATTCCAGCAGGCATTAGCAAGCACATCCATGCAAGCAGCTATCTGATTGCAGGAGGTGTAGCAGGCGCTGCCTCACGTACAACAACTGCACCCCTTGATCGTTTGAAGGTTGTACTGCAAGTGCAAACAACACGAGCTCATATAATGCCTGCAGTAAAAAATATATGGAAAGAAGGTGGTTTCTTAGGATTTTTTCGAGGCAATGGGTTAAATGTTCTTAAGGTGGCCCCTGAGAGTGCTATTAGATTTTACACCTATGAGATGCTAAAGACCTTCATTGTGAATGCTAAAGGAGAAGGGACAAAGGCTGATGTTGGTACTTTGGGACGGCTTCTAGCTGGTGGTACGGCTGGTGCTGTGGCTCAAACTGTAATATATCCTCTGGATCTTGTTAAAACACGAATACAAACTCATGCTTGTGAAGGTGGAAAACTTCCCAGTCTTGGAACCCTCTCAAAAGATATATGGGTTAAGGAAGGACCCCGCGCATTTTATAAGGGTTTGATTCCTTCTATTCTGGGGATTATCCCTTATGCTGGCATAGATCTTGCTGCATATGAATCCTTGAAAGACATGTCCAAGAAATATATTCTTCTTGATGAAGACCCTGGTCCTCTGATACAATTAGGATGTGGGACGGTATCAGGTGCCCTTGGAGCAACATGTGTTTACCCATTGCAGGTTGTTAGAACAAGAATGCAGGCTCAACATGCTTATATGGGAATGTCAGATGTATTCAGGAGAACTTTTAGGCACGAAGGGCTAAGGGGATTCTACAAAGGATTATTTCCTAACCTGCTCAAAGTTGTTCCATCTGCTAGTATCACTTATTTGGTCTATGAGAATATGAAAAAAGGCTTGGATTTGGAGTGA 1440 0.4736 MGANRRKSEEPEVTMDHVLLASGESAPQREARIRALFGFFDEQGRGYLDHALIERGLAALGMPSESDYARDLLGACDADKDGRVEYGEFKRYMEEKEVELYRIFQAIDVEHSGCISPEELWHALVRAGIQIDDVELARFVERVDKDHNGVITFGEWRDFLLLYPHEATIENIYHYLERVCLVDIGEQTVIPAGISKHIHASSYLIAGGVAGAASRTTTAPLDRLKVVLQVQTTRAHIMPAVKNIWKEGGFLGFFRGNGLNVLKVAPESAIRFYTYEMLKTFIVNAKGEGTKADVGTLGRLLAGGTAGAVAQTVIYPLDLVKTRIQTHACEGGKLPSLGTLSKDIWVKEGPRAFYKGLIPSILGIIPYAGIDLAAYESLKDMSKKYILLDEDPGPLIQLGCGTVSGALGATCVYPLQVVRTRMQAQHAYMGMSDVFRRTFRHEGLRGFYKGLFPNLLKVVPSASITYLVYENMKKGLDLE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01292 479 SUPERFAMILY Mitochondrial carrier 197 471 IPR023395 -
Phco5g01292 479 ProSiteProfiles EF-hand calcium-binding domain profile. 131 166 IPR002048 GO:0005509
Phco5g01292 479 ProSiteProfiles Solute carrier (Solcar) repeat profile. 294 381 IPR018108 -
Phco5g01292 479 PANTHER SOLUTE CARRIER FAMILY 25 156 476 - -
Phco5g01292 479 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 111 186 - -
Phco5g01292 479 SMART efh_1 135 163 IPR002048 GO:0005509
Phco5g01292 479 SMART efh_1 68 96 IPR002048 GO:0005509
Phco5g01292 479 SMART efh_1 99 127 IPR002048 GO:0005509
Phco5g01292 479 SUPERFAMILY EF-hand 26 198 IPR011992 -
Phco5g01292 479 Pfam EF-hand domain pair 99 155 IPR002048 GO:0005509
Phco5g01292 479 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Phco5g01292 479 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 281 IPR018108 -
Phco5g01292 479 ProSiteProfiles Solute carrier (Solcar) repeat profile. 392 475 IPR018108 -
Phco5g01292 479 FunFam Mitochondrial substrate carrier family protein 194 477 - -
Phco5g01292 479 Gene3D - 15 176 - -
Phco5g01292 479 Pfam Mitochondrial carrier protein 394 476 IPR018108 -
Phco5g01292 479 Pfam Mitochondrial carrier protein 294 384 IPR018108 -
Phco5g01292 479 Pfam Mitochondrial carrier protein 197 284 IPR018108 -
Phco5g01292 479 Gene3D Mitochondrial carrier domain 194 476 IPR023395 -
Phco5g01292 479 PRINTS Mitochondrial carrier protein signature 203 216 IPR002067 GO:0055085
Phco5g01292 479 PRINTS Mitochondrial carrier protein signature 256 276 IPR002067 GO:0055085
Phco5g01292 479 PRINTS Mitochondrial carrier protein signature 401 423 IPR002067 GO:0055085
Phco5g01292 479 PRINTS Mitochondrial carrier protein signature 216 230 IPR002067 GO:0055085
Phco5g01292 479 PRINTS Mitochondrial carrier protein signature 354 372 IPR002067 GO:0055085
Phco5g01292 479 PRINTS Mitochondrial carrier protein signature 309 327 IPR002067 GO:0055085
Phco5g01292 479 ProSitePatterns EF-hand calcium-binding domain. 144 156 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01292 Phco-Chr5 47670792 47673595 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00905 2 11090071 11092905 Phco5g01292 5 47670792 47673595 PCT