Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00905 ATGAAGAAGGCGTCACCTGTGACGATGGATCACGTGCTTCTGGCGTCGCAGGAGACGAAGGAGGCGCGTGAAGTGCGGATTCGGGGCCTCTTCGAATTCTTCGACAGAGATAATCACGGGTTCTTGGACTACACGAAGATCGAGGCGGGTCTATCGGCGCTTCAGATTCCGTCGGAGTACAAGTACGCGAAGGATTTGTTGAACGCTTGCGATGAGAACAAGGATGGGAGAGTGGATTTCCAAGAGTTCAAGAGGTACATGGACGACAAGGAGTTGGATATTTACCGCATTTTTCAGGCCATCGATGTTGCGCACAATGGCTGCATTTTGCCTGAGGAGCTTTTGGAGGCTCTTTTAAAAGCAGGGATTAAGATTGATGATGTGGAACTTGCCCGTTTTGTTGAGCATGTTGACAAGGATAATAATGGTGTTATAACATTTGAAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACCATGGAGAACATTTACCATTATTTGGAGCGGATATGTATGGTTGATATTGGGGAACAGTCTGTTATTCCAGCAGGCATTAGTAAGCACATTCATGCCAGTAGGTATCTGATTGCAGGAGGAGTAGCAGGTGCTACATCACGCACAGCAACTGCACCACTTGACCGCCTGAAGGTTGTATTGCAAGTCCAAACAGCACAAGCTCACATAACGCCTGCAATAAAAGCTATATGGAAAGAGGGTGGTTTGTTAGGATTTTTTCGAGGGAATGGCTTAAATGTTTTAAAGGTTGCCCCTGAGAGTGCCATTAGATTTTATAGCTATGAGATGTTGAAGACCTTTATTGTAAGGGCCAAAGGGGAAGAGACACAGGCTGGTATTGGAGCCATGGGGCGGCTACTAGCTGGTGGTATTGCTGGTGCTATAGCTCAAACTGCAATATATCCCATGGATCTTGTTAAAACGCGACTACAAACCTATGCTTGTGAAAGCAGAGGAATTCCTAGTCTTGGAACCCTTTCAAAAGATATTTGGCTTCAGGAAGGACCCCGAGCATTTTATAGGGGATTGATTCCTTCTCTTCTTGGGATTATCCCTTACGCTGGTATAGATCTTGCTGCGTATGAAACCTTGAAGGATATGTCCAAGCTGTATATTCTTCATGATGGAGAACCTGGCGCTCTAGTGCAATTAGGATGTGGGACTGTATCTGGAGCTCTTGGAGCAACATGCGTTTACCCACTACAGGTGGTTAGAACAAGAATGCAGGCTCAACGCTCTTATAAGGGAATGGCTGATGTATTCAGGAAAACCTTGGAAAATGAAGGCTTTAGGGGATTCTACAAAGGAATATTTCCTAACTTACTCAAGGTTGTACCCTCAGCAAGCATCACCTACATGGTTTATGAGAGTATGAAAAAAAGTTTGCATTTGAATTGA 1422 0.4501 MKKASPVTMDHVLLASQETKEAREVRIRGLFEFFDRDNHGFLDYTKIEAGLSALQIPSEYKYAKDLLNACDENKDGRVDFQEFKRYMDDKELDIYRIFQAIDVAHNGCILPEELLEALLKAGIKIDDVELARFVEHVDKDNNGVITFEEWRDFLLLYPHEATMENIYHYLERICMVDIGEQSVIPAGISKHIHASRYLIAGGVAGATSRTATAPLDRLKVVLQVQTAQAHITPAIKAIWKEGGLLGFFRGNGLNVLKVAPESAIRFYSYEMLKTFIVRAKGEETQAGIGAMGRLLAGGIAGAIAQTAIYPMDLVKTRLQTYACESRGIPSLGTLSKDIWLQEGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDMSKLYILHDGEPGALVQLGCGTVSGALGATCVYPLQVVRTRMQAQRSYKGMADVFRKTLENEGFRGFYKGIFPNLLKVVPSASITYMVYESMKKSLHLN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00905 473 FunFam Mitochondrial substrate carrier family protein 1 92 - -
Phco2g00905 473 SUPERFAMILY Mitochondrial carrier 191 464 IPR023395 -
Phco2g00905 473 CDD EFh 26 87 IPR002048 GO:0005509
Phco2g00905 473 Gene3D Mitochondrial carrier domain 188 471 IPR023395 -
Phco2g00905 473 PRINTS Mitochondrial carrier protein signature 210 224 IPR002067 GO:0055085
Phco2g00905 473 PRINTS Mitochondrial carrier protein signature 303 321 IPR002067 GO:0055085
Phco2g00905 473 PRINTS Mitochondrial carrier protein signature 348 366 IPR002067 GO:0055085
Phco2g00905 473 PRINTS Mitochondrial carrier protein signature 250 270 IPR002067 GO:0055085
Phco2g00905 473 PRINTS Mitochondrial carrier protein signature 197 210 IPR002067 GO:0055085
Phco2g00905 473 PRINTS Mitochondrial carrier protein signature 395 417 IPR002067 GO:0055085
Phco2g00905 473 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 105 180 - -
Phco2g00905 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 386 469 IPR018108 -
Phco2g00905 473 Gene3D - 2 93 - -
Phco2g00905 473 PANTHER SOLUTE CARRIER FAMILY 25 150 471 - -
Phco2g00905 473 SUPERFAMILY EF-hand 21 192 IPR011992 -
Phco2g00905 473 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Phco2g00905 473 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Phco2g00905 473 ProSiteProfiles EF-hand calcium-binding domain profile. 22 57 IPR002048 GO:0005509
Phco2g00905 473 SMART efh_1 26 54 IPR002048 GO:0005509
Phco2g00905 473 SMART efh_1 129 157 IPR002048 GO:0005509
Phco2g00905 473 SMART efh_1 62 90 IPR002048 GO:0005509
Phco2g00905 473 SMART efh_1 93 121 IPR002048 GO:0005509
Phco2g00905 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 192 275 IPR018108 -
Phco2g00905 473 Pfam EF-hand domain pair 93 152 IPR002048 GO:0005509
Phco2g00905 473 Pfam EF-hand domain pair 26 87 IPR002048 GO:0005509
Phco2g00905 473 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Phco2g00905 473 FunFam Mitochondrial substrate carrier family protein 188 471 - -
Phco2g00905 473 Pfam Mitochondrial carrier protein 388 471 IPR018108 -
Phco2g00905 473 Pfam Mitochondrial carrier protein 191 278 IPR018108 -
Phco2g00905 473 Pfam Mitochondrial carrier protein 289 375 IPR018108 -
Phco2g00905 473 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Phco2g00905 473 CDD EFh 62 154 IPR002048 GO:0005509
Phco2g00905 473 Gene3D - 105 180 - -
Phco2g00905 473 ProSiteProfiles EF-hand calcium-binding domain profile. 96 124 IPR002048 GO:0005509
Phco2g00905 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 288 375 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00905 Phco-Chr2 11090071 11092905 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00905 2 11090071 11092905 Phco2g00905 2 11090071 11092905 ECH
Phco2g00905 2 11090071 11092905 Phco5g01292 5 47670792 47673595 PCT