Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01196 ATGGGCGCGAGTCGGAAACTCCAGGGCGAGATTGATCGTGTTCTGAAGAAGGTTCAGGAAGGCATCGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACGGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCTGACCTGAAGAAGGAGATTAAGAAGCTGCAGAGGTACAGGGACCAGATTAAGACTTGGATTCAGTCCAGTGAAATCAAAGATAAGAAGGTTAGTGCCTCGTATGAGCAGGCCCTGGTGGATTCGCGCAAGCTTATTGAGCGTGAAATGGAAAGATTCAAGATCTGTGAGAAGGAGACAAAGACAAAAGCATTCTCTAAAGAAGGCTTAGGTCAACAGCCCAAAACTGATCCTAGAGGGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAGTGTGGTTGCGGAATTAGAATCTCACATCGATAACTTTGAAGCGGAGCTTGAAGGACTTTCTGTAAAAAAAGGAAAGAGCAAGCCACCCAGATTGATACATCTAGAAACATCAATTACTCGGCACAAGGCTCACGTAAAGAAATGTGAGTTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGCAGGTGAATGATGTCAAAGATTTCTTGGATGACTATGTAGAGCGTAATCAGGAGGACTTTGAAGAATTTAATGATGTTGATGAGCTATATAGTTCATTACCCCTAGACAAGGTGGAGTCACCGGAAGATATTGTAACAATTCCTCCTGGTCTTGCTAAGGTGGCACCTGTGCTTAGCTTGAAGCCTTTGCCAACATCAGCTTCAGCATCACAAACATCTGAGCAAGCTGATGATACAGCTTCTCAGGATAGCAATTCTGATGTTGGTGCAAGAACTCCACCTCCTAAAAGTAGTACAGTTAGTTCTACTGCTACAACACCAGCAGGGAATTTTGCTACTCCTGTTTCTATAAATCTTCCAGTGCCTAACTTGTCAAGTCCACCGGCCATTTCATCAGTCACACCTGGTTCAAATTCTGTTCGGAGTTCCTTGGAAATTAGTAGTGCTGTCACTGCTTCATCTTTTGTAAATCAGTCTAGCACTATGAAAGAGGAAGAGATTAATAGTTTCCCTGGCCGAAGACCATCTCCATCACTTTCGGATGTTGCACTCACAAGGAATATCAGCAGAAACAGCCTATCAAATCAAACAACAAATAGCATACCTCTTGTTTCTGGAAACATGGTTTCCAGCAATGGGCCTCTTGGTTCAGTTTCTTCCACTTCTGAAATAACCAAGAGAAACATATTGGTTGCTGATGATAGACTTGGAAACAATGGGATGGTGTCGGCTCTTGTATCCCCTTTAAGTAATAGAATGATTATGCCTCAGGTTGCAAGGGCTAGTGATGGAACTTCCTCAGTTGACTCTAGTAATGCCAGCGAAGGTGCAACTGTGTCTGGGAGAGTTTTCTCCCCTTCTGCTATTCCTGGCATGCAATGGAGACCTGGAAGCCCCTTCCAGAATCAGAATGACGTGGGTCATGTTCGTGCAAGAACTGAAATAGTTCCTGATCAAAGGGAAAGATATTTACAGAAGTTCCAGCAAGTGCAACAACAAGGGCAAAGTGCCCTTCTTAATATGCCATCTTTTCCAGGAGGGAATCACAAGCAGTTTTCTGCTCAGCAGCAAAGTCCTCTCTTCCAGCAGTTCAATTCTCAATCTGGTGTGGGACTTGGAGTCCAGTCATCAGGTCTTAGTGGTATTTCTTCCACCTCATTACCCCAGCCATCCATTTCTATCCATTCCCCATCTAGCCAACAATCATTGCTGTCAGTTGTTTCTAAAGATCCAGATGCTGGCAATTCTAAGGTTGACGAGTCACAGCAACAGATTTTTCCTGATGATTCGGGGACTGAATCTACTGCTACTGGAATTAGCAAGAATTTTATGAATGAAGATGAACTGAAATCCACGTATGCTGTAGACTCTCCGGCAGGAGTACCTACCTCTCTTCCAGAGCCTATTCAGACTTCTAGAGATATTGATTTGTCTCCCGGCCAACCATTACAATCAAATCAGCGTACTGGTAACCTTGGTGTTATAGGAAGAAATTCTACTGACATTGGACCTGTTGGTGACAACTTTAGTGCATTAACTGCTAATTCTGGTGGAGTTCGTGATCAGTTATATAATTTGCAGATGCTTGAGGCAGCTCACCTCAAACTTCCACAACCTAAGGACTCAGAACATCCCAGGACCTATACTCCTAAACATCCTACGATAACTCCTCCTAGTTTTCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCCTTTTGGGAGAGAGTGGGTCTAGAACCATATGGTACTGATACCCTGTTCTTTTCATTTTACTATCAACAGAACACTTACCAACAATATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGGAGATATCACCGCAAGTATAACACATGGTTTCAACGGCATGAAGAGCCAAAAGTTGCAACAGATGAATATGAGCAAGGAACATATGTGTACTTTGATTTCCATATAGAAAATGATGACATGCAACATGGGTGGTGTCAAAGAATCAAGACTGACTTCACTTTTGAATATAATTACCTTGAAGATGAGCCTATTGTCTAG 2634 0.4298 MGASRKLQGEIDRVLKKVQEGIEVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDSRKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPRGKAKSETRDWLNSVVAELESHIDNFEAELEGLSVKKGKSKPPRLIHLETSITRHKAHVKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFNDVDELYSSLPLDKVESPEDIVTIPPGLAKVAPVLSLKPLPTSASASQTSEQADDTASQDSNSDVGARTPPPKSSTVSSTATTPAGNFATPVSINLPVPNLSSPPAISSVTPGSNSVRSSLEISSAVTASSFVNQSSTMKEEEINSFPGRRPSPSLSDVALTRNISRNSLSNQTTNSIPLVSGNMVSSNGPLGSVSSTSEITKRNILVADDRLGNNGMVSALVSPLSNRMIMPQVARASDGTSSVDSSNASEGATVSGRVFSPSAIPGMQWRPGSPFQNQNDVGHVRARTEIVPDQRERYLQKFQQVQQQGQSALLNMPSFPGGNHKQFSAQQQSPLFQQFNSQSGVGLGVQSSGLSGISSTSLPQPSISIHSPSSQQSLLSVVSKDPDAGNSKVDESQQQIFPDDSGTESTATGISKNFMNEDELKSTYAVDSPAGVPTSLPEPIQTSRDIDLSPGQPLQSNQRTGNLGVIGRNSTDIGPVGDNFSALTANSGGVRDQLYNLQMLEAAHLKLPQPKDSEHPRTYTPKHPTITPPSFPQVQAPIVNNPAFWERVGLEPYGTDTLFFSFYYQQNTYQQYMAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIENDDMQHGWCQRIKTDFTFEYNYLEDEPIV 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01196 877 PIRSF NOT_su_3_5 1 877 IPR012270 GO:0006355|GO:0030015
Phco5g01196 877 Coils Coil 41 61 - -
Phco5g01196 877 MobiDBLite consensus disorder prediction 655 693 - -
Phco5g01196 877 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Phco5g01196 877 Gene3D - 717 872 IPR038635 -
Phco5g01196 877 MobiDBLite consensus disorder prediction 579 637 - -
Phco5g01196 877 Pfam NOT2 / NOT3 / NOT5 family 734 871 IPR007282 GO:0006355
Phco5g01196 877 MobiDBLite consensus disorder prediction 462 482 - -
Phco5g01196 877 MobiDBLite consensus disorder prediction 264 307 - -
Phco5g01196 877 MobiDBLite consensus disorder prediction 617 637 - -
Phco5g01196 877 Coils Coil 139 159 - -
Phco5g01196 877 PANTHER CCR4 NOT-RELATED 24 874 IPR040168 GO:0030015
Phco5g01196 877 FunFam CCR4-NOT transcription complex subunit 3 isoform X1 717 872 - -
Phco5g01196 877 MobiDBLite consensus disorder prediction 664 693 - -
Phco5g01196 877 MobiDBLite consensus disorder prediction 110 130 - -
Phco5g01196 877 MobiDBLite consensus disorder prediction 579 609 - -
Phco5g01196 877 MobiDBLite consensus disorder prediction 462 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01196 Phco-Chr5 45485104 45533341 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01175 2 37531640 37542750 Phco5g01196 5 45485104 45533341 PCT