Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01175 ATGGGTGCGAGTCGAAAGCTCCAGGGAGAGATAGATCGTGTTCTGAAGAAGGTCCAGGAAGGTGTTGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACGGACAATGCTAACCAGAAGGAGAAATTTGAAGCAGACCTCAAGAAGGAGATTAAGAAGCTCCAGAGGTATAGAGACCAAATAAAAACGTGGATTCAGTCCAGTGAGATCAAGGACAAGAAGGTTAGTGCCTCATATGAGCAGGCTTTGGTGGATGCACGCAAGCTAATTGAACGTGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACAAAGACCAAAGCATTTTCTAAAGAAGGTTTGGGTCAGCAGCCTAAGACTGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGAGAGTTAGAATCACAGATTGATAACTTTGAAGCAGAGCTTGAAGGGCTTTCTGTTAAGAAAGGAAAGAGCAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAAAAATGTGAATTCATTTTGAGGCTACTAGATAATGATGAATTAAGTCCTGAGCAGGTTAATGATGTTAAGGATTTCTTGGATGACTATGTTGAGCGTAATCAGGAGGATTTTGATGAATTTAGTGATGTTGATGAACTGTACAGTTCATTACCTTTAGACAAGGTGGACACCCTAGAAGAACTTGTTACAATTCCCACCGCTCTTTCTAAGGTGGCACCTAGTCTTGGTGTGAAAAATTCTTCAGCAGTATCAACATCACAATCAGCGTCAGCATCTGCATCACAAACATCTGAAACTATTATTTCTAATCATCAGGATACATCTATCCAGGAGCAAGCTGACGACACAGCATCCCAGGATAGCAATTCTGACAATGTTGTCAAAACTCCACCTCCTAAAAGTGGTGGAATTAGTTCTGCTGCTTCAACTCCTACTGGCAACCTCACTTCTCCAATTTCTGTGAATGTTTCTAGTCATACCCTATCTAGTCCACCTGCTGTTGCAGCCATACCTAGCTCAAATTCGGTGCGGAATGTCTTGGAGAGTAGTAATGTTACCAATTCATCTTCTGCAAATCAGTCTACCTCTACTAAGGAGGAAGACATTAATAGCTTCCCTAGCCGGAGACCTTCTCCATCGCTTTCTGATGCAACACTTTTGAGGGGAAGAAACTCCCTATCAAATCAAGCAACAGCCAGCATCCCTCTTGGTTCTGCAAACATGGTTCCTAGCAATGGGGCCCTTGGATCAGTCCCTTCAGCCTCTGAAATAGCTAAGAGGAACATGTTGGCAGCTGATGATAGACTTGGAAGTAGTGCGATGGTGCAGCCTCTTGTATCCCCACTAAGTAATAGATTGATCTTGCCTCAGGCTGCAAAGGCTAATGATGGAACGGTTTCAGTTGACTCTGGTACTGTTAATGACACTGGAGCTGTATCTGGGAGAGTTTTCTCCCCTTCTGTTGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGCTGGCCAGCTTCGGGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAAGTTTTTGCAGAAGTATCAGCAAGTGCAACAAGGGCACAGTACCCTTCTTAATATGCCTTCTCTTGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAACCCCCTTTTGCAACAGTTTAACTCTCATGGCTCATCTGTTTCTTCTCAATCTGGTATTGGACTTGGGGTCCAGTCCGCAAGTCTCGGTGGTATTTCTTCTGCATCACTACAGCAGCCACCCAATTCTGTCCATTCCCCCTCTAGTCAACAGTCACTGATGCCAGGCGTTTCTAAAGATTCAGATGTTGGCAATTCTAAGAGTGAAGAACAGCAGCAACATCAGAATTTTCCTGATGAGCCAATAACTGAATCTACTGTTAGCACTGGGATTGGCAAGAATCTCATAAATGAAGATGATTCAAAATCAGCATATGCTGTAGATTCTCCAGTAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGAGATATTGATTTATCTCCTGGCCAACCATTACAATCCAATCAACCAACTGGCAACCTTGGTGTCATTGGTAGAAGAAATGGTTCTGAACATGGAGCAATTGGTGATGGTTTTAATGTATCCAGTGTTAGTTCTGGTGGAGTGCGTGATCAATTGTATAATTTGCAAATGCTTGAGGCAGCCCACTTCAAAATTCCCCTACCCAAAGACTCTGAACGTCCCAGGACTTATACACCTAAACATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGTCACCTATTGTTAATAATCCCGCCTTTTGGGAGAGAGTGGGTCTGGAACCATTTGGCACTGATACTCTATTCTTTGCGTTTTATTATCAACAGAATACTTACCAACAATATCTGGCTGCAAAGGATTGCTACTGA 2502 0.4333 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKSRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVDTLEELVTIPTALSKVAPSLGVKNSSAVSTSQSASASASQTSETIISNHQDTSIQEQADDTASQDSNSDNVVKTPPPKSGGISSAASTPTGNLTSPISVNVSSHTLSSPPAVAAIPSSNSVRNVLESSNVTNSSSANQSTSTKEEDINSFPSRRPSPSLSDATLLRGRNSLSNQATASIPLGSANMVPSNGALGSVPSASEIAKRNMLAADDRLGSSAMVQPLVSPLSNRLILPQAAKANDGTVSVDSGTVNDTGAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGHSTLLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSASLGGISSASLQQPPNSVHSPSSQQSLMPGVSKDSDVGNSKSEEQQQHQNFPDEPITESTVSTGIGKNLINEDDSKSAYAVDSPVGVSASLPESAQTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGSEHGAIGDGFNVSSVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPTITPPSYPQVQSPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKDCY 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01175 833 MobiDBLite consensus disorder prediction 289 329 - -
Phco2g01175 833 MobiDBLite consensus disorder prediction 289 312 - -
Phco2g01175 833 Coils Coil 41 61 - -
Phco2g01175 833 Coils Coil 132 159 - -
Phco2g01175 833 MobiDBLite consensus disorder prediction 687 724 - -
Phco2g01175 833 MobiDBLite consensus disorder prediction 110 131 - -
Phco2g01175 833 MobiDBLite consensus disorder prediction 366 401 - -
Phco2g01175 833 PANTHER CCR4 NOT-RELATED 24 830 IPR040168 GO:0030015
Phco2g01175 833 PIRSF NOT_su_3_5 1 832 IPR012270 GO:0006355|GO:0030015
Phco2g01175 833 Gene3D - 742 833 IPR038635 -
Phco2g01175 833 MobiDBLite consensus disorder prediction 687 718 - -
Phco2g01175 833 Pfam NOT2 / NOT3 / NOT5 family 758 830 IPR007282 GO:0006355
Phco2g01175 833 MobiDBLite consensus disorder prediction 604 659 - -
Phco2g01175 833 MobiDBLite consensus disorder prediction 765 787 - -
Phco2g01175 833 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01175 Phco-Chr2 37531640 37542750 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01175 2 37531640 37542750 Phco2g01175 2 37531640 37542750 ECH
Phco2g01175 2 37531640 37542750 Phco5g01196 5 45485104 45533341 PCT