Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01195 ATGGGAAAAGGGTGGTTTTTGAGATGGGTTTTTGTTGTGATCGGGGTGATGGGTTGGTGGGGTGTGGAAGGGCTTGGGGTGAACTGGGGGACTCAAGCTACACACCAGTTGAGAGCAGACACTGTGGTTGAGATGTTGAAGGACAATGGGATTCAAAAGGTGAAGCTGTTTGATGCTGATGAGTCTAGCATGAGTGCTCTATCTGGGTCGGGGATTGAAACCATGATTGCCATTCCCAATAACCAACTTTCTGAGATGAATGACTATGATCGTGCCATGCAGTGGGTGAAGAAAAATGTCACAAGTTACAACTTCAGGGGTGGAGTTAACATCAAGTATGTAGCAGTTGGGAACGAGCCATTTTTGAGATCCTACAATGGTTCATTCATGAAAGTCACCTTCCCTGCATTACAGAACATTCAAAATGCCCTGAATGAAGTTGGTGTAGGAGACTCCATAAAAGCCACAGTGCCCTTAAACGCTGATGTGTATGAGTCTCCAATAAACAACCCTGTTCCATCAGCTGGAATGTTTAGGCTTGATATAAGTGAGCTAATGATTCAAATTGTGCAATTTTTGGGCAAGAACAATGCACCATTCACAGTGAACATTTACCCCTTCTTGAGCCTCTATGGGAATGACAATTTCCCTTTTGACTATGCCTTCTTTGATGGGGTGGCCAATCCCATAAATGATAATGGGGTTTCATACACCAATGTCTTTGATGCAAACTTTGACACCTTGGTCTCTGCCCTCAAAAAAGTGGGGTATGGGGACATGCCAATTTTGGTAGGAGAGGTAGGATGGCCAACAGATGGGGACAAAAATGCCAATGTGGGCAATGCTTTTAGGTTCTACAATGGGCTTCTACCAAGGCTTGCACTGAATAAAGGGACCCCACTTAGGCCAAAATATATTGAAGTTTATCTTTTTGGGCTCATTGATGAAGATGCCAAAAGCATTGCCCCAGGGAACTTTGAGCGCCATTGGGGAATTTTTAAGTATGATGGAAAGCCTAAGTTTCCAATGGACCTTTCTGGAAAAGGCCTAAAAAAGTTACTAGTTGGTGCTCAAAATGTGCACTATCTTGATCCAAAGTGGTGCATGTTCAACCCTGATACACAGGACATAAGCAAACTTGCTGATAACATAAATTATGCTTGCACCCTTGCTGATTGCACTGCACTTGGATATGGATCTTCTTGCAACAACTTGGATGCAAATGGGAATGCCTCATATGCATTTAACATGTATTACCAGACGCAGGATCAGAATGACTTGGCCTGCAATTTTGAAGGTTTGGCAAGGCTTACAACAAGCAACATTTCAACACCATCTTGCAACTTTATTCTTCAGATAAATCCTTCCCTATCCCCCCCTTCTCTCAGGCCTCCAATAGTAGCTTTCTTATCTATCATTCTACCCTTGATTTTAATGTTGTAG 1443 0.4304 MGKGWFLRWVFVVIGVMGWWGVEGLGVNWGTQATHQLRADTVVEMLKDNGIQKVKLFDADESSMSALSGSGIETMIAIPNNQLSEMNDYDRAMQWVKKNVTSYNFRGGVNIKYVAVGNEPFLRSYNGSFMKVTFPALQNIQNALNEVGVGDSIKATVPLNADVYESPINNPVPSAGMFRLDISELMIQIVQFLGKNNAPFTVNIYPFLSLYGNDNFPFDYAFFDGVANPINDNGVSYTNVFDANFDTLVSALKKVGYGDMPILVGEVGWPTDGDKNANVGNAFRFYNGLLPRLALNKGTPLRPKYIEVYLFGLIDEDAKSIAPGNFERHWGIFKYDGKPKFPMDLSGKGLKKLLVGAQNVHYLDPKWCMFNPDTQDISKLADNINYACTLADCTALGYGSSCNNLDANGNASYAFNMYYQTQDQNDLACNFEGLARLTTSNISTPSCNFILQINPSLSPPSLRPPIVAFLSIILPLILML 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01195 480 SMART X8_cls 366 449 IPR012946 -
Phco5g01195 480 Pfam X8 domain 366 435 IPR012946 -
Phco5g01195 480 SUPERFAMILY (Trans)glycosidases 25 344 IPR017853 -
Phco5g01195 480 FunFam Glucan endo-1,3-beta-glucosidase 5 24 351 - -
Phco5g01195 480 FunFam Glucan endo-1,3-beta-glucosidase 8 362 458 - -
Phco5g01195 480 Pfam Glycosyl hydrolases family 17 25 344 IPR000490 GO:0004553|GO:0005975
Phco5g01195 480 Gene3D - 363 456 - -
Phco5g01195 480 Gene3D Glycosidases 24 351 - -
Phco5g01195 480 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 438 IPR044965 GO:0004553|GO:0005975
Phco5g01195 480 ProSitePatterns Glycosyl hydrolases family 17 signature. 260 273 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01195 Phco-Chr5 45474368 45476848 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01176 2 37602642 37605700 Phco5g01195 5 45474368 45476848 PCT