Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01176 ATGGAAAAAAACTGGGTTTTGAGATGGGTGTTGGTGGTGGGGGTGATGTGTTGGTGTGGGGAAGGGATTGGTGTGAATTGGGGAACCCAAGCAACGCATAAGTTGCCACCAGACACAGTGGTTCAGATGTTGAAGGACAATGGGATTCAGAAAGTGAAGCTTTTTGACGCAGATGACTCCACCATGAGTGCCTTGGCTGGGACTGGGATTGAAGTAATGGTGGCTATCCCTAATATCCAGCTTGCTGAGATGAATGACTTTGGCAGGGCCAAACAGTGGGTTAAGAAAAACGTCACGCGTTACAACTTCAATGGGGGTGTTAACATCAAGTATGTAGCAGTTGGGAACGAGCCATTTTTGAAATCCTACAACAATTCATTCTTGAATATCACCTTTCCTGCTCTGCAGAACATTCAAAATGCCCTTAACGATGCAGGTGTTGGAGACACAATAAAGGCTACAGTACCCTTGAATGCAGATGTGTATCAGTCTCCAGAGAACAATCCTGTTCCATCTGCAGGAATATTCAGGCCTGATATCACTGGTCTCATGACCCAGATAGTGCAATTTCTCAGCAAGAATGGTGCACCATTTACTGTGAACATTTACCCCTTCTTAAGTCTTTATGGAAACGATGATTTTCCTTTCAACTATGCCTTCTTTGACGGCGTAGACAATCCAGTAAACGATAATGGTACTCCATACACCAATGTCTTTGATGCAAATTTTGATACCTTGGTTGCAGCTCTCAAATCAGTGGGGTTTGGAGACCTGCCAATTTTGGTGGGGGAAGTAGGATGGCCAACAGAAGGAGACAAGAATGCCAATGTTGGCAATGCTTTGAGGTTCTATAATGGCCTTCTTCCAAGGCTTGCAGGCAACAGAGGCACACCGCGCCGCCCAGGACACATTGAAGTTTATCTTTTTGGACTCATTGATGAGGATGCCAAGAGCATTGCTCCAGGAAACTTTGAACGTCACTGGGGAATATTCAGATATGATGGACAAACCAAGTTTCCAATGGACCTTTCTGGTCAGAACCAAAACAAATTTCTCATAGGTGCACAGAATGTGAAGTACCTTGCTCCAAGGTGGTGCATGTTTAATCCTAATGCTAAGGATCTAACTAGCCTTCCAGATAACATCAACTATGCCTGCACCTTTGGAGATTGCACTGCACTTGGATACGGATCCTCTTGCAACAACCTTGATGCTAATGGCAATGCCTCTTATGCCTTTAATATGTACTTCCAGGTGCAAAATCAGAACCCCATGGCCTGCAATTTTCAAGGTTTGGCCAAAATTACTACGGACAATATCTCAACACCAACTTGCAATTTTATCATTCAGATAGTTAGTTCTTCAGCCTCTTCTTTGATTCCCTCACTTGTTGCTTTCTTGTTTGTTAGTTTATTCATGATCCTGTTTTGGTAG 1434 0.4372 MEKNWVLRWVLVVGVMCWCGEGIGVNWGTQATHKLPPDTVVQMLKDNGIQKVKLFDADDSTMSALAGTGIEVMVAIPNIQLAEMNDFGRAKQWVKKNVTRYNFNGGVNIKYVAVGNEPFLKSYNNSFLNITFPALQNIQNALNDAGVGDTIKATVPLNADVYQSPENNPVPSAGIFRPDITGLMTQIVQFLSKNGAPFTVNIYPFLSLYGNDDFPFNYAFFDGVDNPVNDNGTPYTNVFDANFDTLVAALKSVGFGDLPILVGEVGWPTEGDKNANVGNALRFYNGLLPRLAGNRGTPRRPGHIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQTKFPMDLSGQNQNKFLIGAQNVKYLAPRWCMFNPNAKDLTSLPDNINYACTFGDCTALGYGSSCNNLDANGNASYAFNMYFQVQNQNPMACNFQGLAKITTDNISTPTCNFIIQIVSSSASSLIPSLVAFLFVSLFMILFW 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01176 477 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Phco2g01176 477 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Phco2g01176 477 Gene3D - 361 459 - -
Phco2g01176 477 Gene3D Glycosidases 21 351 - -
Phco2g01176 477 SMART X8_cls 364 447 IPR012946 -
Phco2g01176 477 FunFam Glucan endo-1,3-beta-glucosidase 8 360 456 - -
Phco2g01176 477 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 16 436 IPR044965 GO:0004553|GO:0005975
Phco2g01176 477 FunFam Glucan endo-1,3-beta-glucosidase 5 22 349 - -
Phco2g01176 477 Pfam X8 domain 365 433 IPR012946 -
Phco2g01176 477 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01176 Phco-Chr2 37602642 37605700 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01176 2 37602642 37605700 Phco2g01176 2 37602642 37605700 ECH
Phco2g01176 2 37602642 37605700 Phco5g01195 5 45474368 45476848 PCT