Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00854 ATGGCTCAGGTCGCCGTCACACGATCCATTCAAAGCACTCTTTTGTGCCCCTCTTCTGGATCTGCACGTGACAGGGCCCAAAACCTGTTAAAGCCTCCATCTTTTGCTTCCACTGTGTTACCTTCTCAAGGGAACAATAGTAAAAGCTCCCAACTCTGCCCCAGAAGCTTTCAGATCAGTGCAAGGAAATCTGCCCCTTCTGAAGTCATCCCCGTGTCGCCCGAAGATGATCCAAAGATTGAGCAGCATTTGCAACATTTACGGGGAGTGCAGCCATTTGGGGAGAGTTCGGCTGGGATGTGGTCGAAGCCCACGTTTAGGCGCAAGACAAAGATCGTGTGTACCATTGGACCTTCTACCCATTCGAAGGAAATGATTTGGAAGCTGGCTGAGGCTGGGATGAACGTTGCTCGGTTGAATATGTCTCATGGGGACCATGCTTCTCATCAGAAGGTCATTGACTTGGTTAAGGAATATAATGATCAAAACAAGGACAATGTGATTGCAATCATGCTTGACACAAAGGGTCCTGAAGTTAGGAGTGGGGATTTGCCACAACCTATTATATTAATGCCTGGGCAGGAATTCACTTTTACTATTCAGAGAGGTGTTGGCACTGCAGATTGTGTTAGTGTGAACTACGATGATTTTGTCAATGATGTGGAAATTGGGGATATGCTTCTTGTTGATGGTGGTATGATGTCTATGGTGGTTAAGTCTAAGACAGAGGATTCTGTGAAATGTGAAGTTATTGATGGAGGAGAGCTCAAGTCTAGGCGACATTTGAATGTTAGAGGAAAAAGTGCTACACTGCCTTCAATCACTGAGAAGGATTGGGATGATATCAAGTTTGGAGTTGATAACAAAGTTGACTTCTATGCTGTTTCCTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGAGCAGTGGTGTTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTATACCAAATTTGCACTCAATTATCACTGCATCTGATGGGGCCATGGTTGCCAGAGGAGATCTTGGTGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGGAAGAGATAATCAACTTGTGTCGTAGCATGGGAAAGGCTGTTATTGTGGCAACAAATATGCTAGAAAGCATGATTGTTCACCCAACTCCAACCAGAGCAGAGGTGTCAGATATAGCAATTGCTGTTCGAGAAGGTTCAGATGGAATAATGTTATCTGGAGAAACAGCTCATGGAAAGTTCCCACTAAAAGCCGTGAAAGTAATGCATACAGTAGCATTGCGGACAGAAGCCACAATACCGGGTGGTCAAATGCCACCAAACATTGGTCCAGTGTTCAAGAACCACATGAGTGAGATGTTTGCCTACCATGCAACAATGATGTCTAACACCCTTGGAACTTCAACTGTTGTCTTCACTAGAACGGGTTTCATGGCTATCTTATTGAGCCACTATCGTCCTTCTGGCACCATATTTGCTTTTACTGATGAGAAGAGGGTGCAGCAGAGGCTTGCTTTGTATCAAGGAGTCTGTCCCATATACATGGAATTCTGTGACGATTCTGAAGCAACCTTCAGAAGAGCCTTGGACCTTCTGCAGAACCAAGGAATGGTGAAGGAAGGAGAAGAAGTAGCACTTGTACAAAGTGGTAGGCAACCCATATGGAGGTTCCAATCCACGCACAATATCCAGGTTAGGAAAGTGTAA 1734 0.4435 MAQVAVTRSIQSTLLCPSSGSARDRAQNLLKPPSFASTVLPSQGNNSKSSQLCPRSFQISARKSAPSEVIPVSPEDDPKIEQHLQHLRGVQPFGESSAGMWSKPTFRRKTKIVCTIGPSTHSKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNDQNKDNVIAIMLDTKGPEVRSGDLPQPIILMPGQEFTFTIQRGVGTADCVSVNYDDFVNDVEIGDMLLVDGGMMSMVVKSKTEDSVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAEVVHELKNYLKSSGVDIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPLKAVKVMHTVALRTEATIPGGQMPPNIGPVFKNHMSEMFAYHATMMSNTLGTSTVVFTRTGFMAILLSHYRPSGTIFAFTDEKRVQQRLALYQGVCPIYMEFCDDSEATFRRALDLLQNQGMVKEGEEVALVQSGRQPIWRFQSTHNIQVRKV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00854 577 ProSitePatterns Pyruvate kinase active site signature. 318 330 IPR018209 GO:0004743|GO:0006096
Phco5g00854 577 Gene3D - 451 577 IPR036918 -
Phco5g00854 577 NCBIfam pyruvate kinase 108 576 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Phco5g00854 577 SUPERFAMILY PK C-terminal domain-like 426 577 IPR036918 -
Phco5g00854 577 PRINTS Pyruvate kinase family signature 416 432 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Phco5g00854 577 PRINTS Pyruvate kinase family signature 347 371 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Phco5g00854 577 PRINTS Pyruvate kinase family signature 320 346 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Phco5g00854 577 PRINTS Pyruvate kinase family signature 166 182 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Phco5g00854 577 PRINTS Pyruvate kinase family signature 290 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Phco5g00854 577 PRINTS Pyruvate kinase family signature 397 415 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Phco5g00854 577 PRINTS Pyruvate kinase family signature 372 396 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Phco5g00854 577 FunFam Pyruvate kinase 273 438 - -
Phco5g00854 577 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 100 442 IPR015813 GO:0003824
Phco5g00854 577 SUPERFAMILY PK beta-barrel domain-like 177 268 IPR011037 -
Phco5g00854 577 Pfam Pyruvate kinase, barrel domain 108 443 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Phco5g00854 577 Gene3D - 110 435 IPR040442 -
Phco5g00854 577 MobiDBLite consensus disorder prediction 16 52 - -
Phco5g00854 577 FunFam Pyruvate kinase 439 558 - -
Phco5g00854 577 Gene3D - 178 271 IPR015806 GO:0004743|GO:0006096
Phco5g00854 577 PANTHER PYRUVATE KINASE 81 555 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Phco5g00854 577 FunFam Pyruvate kinase 178 271 - -
Phco5g00854 577 Pfam Pyruvate kinase, alpha/beta domain 465 557 IPR015795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00854 Phco-Chr5 11620725 11625852 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00854 5 11620725 11625852 Phco5g00854 5 11620725 11625852 ECH
Phco5g00854 5 11620725 11625852 Phco6g02399 6 45374324 45380153 PCT