Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00254 ATGGCGACGCCGCTGACGGGACTGCAGCACATGGACGGCGGTGGCGGAGTGGCGGTGCTTTCGAATCCGGTGAGCAAGGTGGATTCCTCCGCCAATGGCGGCGGCGGCTTCTGCCGGTCGCTGTCCGAATCGCCAATTCTGATATTCTCGTTCTTCCATAAGGCGATTCGGAACGAGCTCGACGCGCTGCACCGATTGGCGATGGCTTTCGCCACCGGAAACTGCTCCGACATCCAGCCCCTCTTCCAACGCTACCGGTTCCTCAGATCGATGTACAAACACCACTCCAATGCTGAAGATGAGGTGATTTTCCCAGCTCTAGATATACGGGTAAAGAATGTAGCACAGACATATTCCCTTGAACACCAGGGTGAAAGTGAAATTTTTGAACATCTATTTGAGCTGTTAAACTCTTCCATCCATAATGTTGAAAGTTTCCCAAAGGAGTTAGCATCCTGCACAGGAGCTCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAGGAGGAGCAGGTATTTCCACTGCTTCTTGAGAAGTTCTCCCTTGAGGAACAGGCCTCTTTAGTTTGGCAGTTTCTCTGTAGTATTCCTGTGAATATGATGACAAAATTTCTTCCGTGGCTCTCTACATCTATATCAGCTGATGAATCTCAGGATTTGCGGAAGTGCTTAAGCAAGATAGTTCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCTCCTGGATGGAAGGGAGAAGTCGAGCTAACACAGTTGAAAATTGTGTAGATCATTCTCAGGTGCGATGTAGTCGTAATCCTTTAACCCATCAGAATGGGAAAATAAAATGTGCATGTGAGTCCACAGCAACTGGGAAAAGGAAATATTCCACGTGTATCATAGATGTTTCTGATACCATGACAACACATCCTATAGATGAAATATTGTTCTGGCATAATGCGATAAAGAAGGAGTTAAATGAGATAGCAGCACAGACCAGAAAGATACAACTCTCTGGAGATTTTACTAACCTGTCAGCTTTCAATGAAAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAAAATTTTCTTTCAGTAAAGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGTTCTTTAATTGAAAGTATTCAAAGTGAAGGAGCAACATCTAGTTCAGAAACTGAATTTTATTCAACATTGTGTTCACATGCTGATCATATATTGGAAACAATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTCTATCAAAGCTTATGCATGATGCCATTGAAGTTGATTGAGCGTGTCCTGCCATGGTTGACTAGTTCATTAACTGAAGATGAAGCACAGATGTTTTTGAAAAACATGCAATTGGCAGCTCCATCAATAGATACTGCTCTAGTCACACTTTTCTGTGGGTGGGCTTGCACGGCTCGTAAAGATGGTCTGTGTTTGTCTTCTAGTGTGTCAGGCTGCTGTCCTGCCCAGCGAATTACTGATATTGAAGAAAATATTGTTCAATCTTCCTGTCCTGCTTCTGCATTGTCTGATAGAGATTGCTCAATATTAGCTGATTCAGATGGGACCCAACAAAGATCAGTCAAGCGAAACATACTGGGGGTGCACAATGAAGATGTCTCTGAAATTTCCGAAAGTGAAAGTACTCAGAAACAATGTTGTAGTTCTCGGTCTTGTTGTGTGCCAGCTTTAGGAGTCAGCAGGAACAATTTGGGGCTGGGTTCACTCACTACAACCAAGTCCTTACGCTCTTTGTCCATCACTGCTTCTGCCCCGTCCATTAATTCTAGTCTTTTCATATGGGAAACTGACAACAGCTCAAGTGATGTTGGCTCTACAGAAAGACCAATAGATACCATATTTAAATTCCATAAAGCCATACGCAAAGACTTGGAGTATTTAGACATTGAATCTGGAAAGCTTTCTGATGGTGATGAAACAATTATTCGGCAATTTAGTGGAAGATTCCGGCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCTGCACTCGAATCCAAAGAGGCACTTCATAACGTCAGCCACTCTTATACCCTGGATCATAAGCAGGAGGAAAAATTATTTGAAGATATTTCCTGTGTTCTTTCTGAACTTTCTGTCCTTCATGAAGTCTTGGTGAGAACCCCTATGTCAGAAGATTTAAGTGAAAATAGTTTTGCAATTCCTGATGCCAATGATAGGGATAATATCAAAAAGTACAACGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCGATAAGAGTAACCTTGGATCAACATATTTTTAGAGAAGAGCTTGAGCTCTGGCCACTGTTTGGAAAGCATTTCACTGTGGAAGAACAAGATAAGATAGTCGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCGCTTACACAGGATGAACAGAGCAAAATGATGGACACATGGAAACAGGCAACCAAAAATACCATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAAAGTCCTGTATCTACAACACAGGCAGAAGCTTCTGAGCGTAGCACTTCTCAAAGAGGTGGTGATTATCAGGAAAGCTTGAACCTGAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATTTTCCGGATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAGGTCTATCGTGACTCAACTCTAGATCCAAGGAGAAAGGCGTATCTTGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCCAAGGCTCCATCTGGGGAATCATCCAGTAAACAAATAGAAGGATGCTCACCATCTTTTCGGGATCCAGAGAAACAAATATTTGGTTGTGAGCACTATAAGCGAAATTGCAAGCTTCGAGCTGCTTGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCACGACAATGCAAGCGACCACTCAATGGATAGAAAAGCAACAATGGAAATGATGTGTATGCAGTGCCTTACCATACAGCCTGTTGGGTCTGTATGCATATCTCCTTCATGTGATGGACTTACAATGGCAAAGTACTATTGCAACATTTGCAAATTCTTTGATGATGAAAGGAATGTTTATCACTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGAATTGATTATTTTCATTGTATGAAATGCAATTGTTGCCTGGGGATAAAATCAGCCTCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGTCCAATTTGCTGTGATGACTTGTTCACATCAAGCGCAACAGTGAGAGCTTTACCGTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGTAGTCACTACACGTGTCCAATCTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTCGGTATGCTTGATGCTTTATTGGCCGCTGAGGAGCTTCCTGAAGAGTACCGGGACCGCTATCAGGATATACTCTGCCATGACTGTGACCGAAAGGCCACTTCACGCTTCCACTGGCTATATCACAAATGTGGATCTTGTGGCTCATACAATACCCGGGTAATCAAGACTGAGGCAACAAATTCTAGCTGCCTTTAG 3726 0.4262 MATPLTGLQHMDGGGGVAVLSNPVSKVDSSANGGGGFCRSLSESPILIFSFFHKAIRNELDALHRLAMAFATGNCSDIQPLFQRYRFLRSMYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHQGESEIFEHLFELLNSSIHNVESFPKELASCTGALQTSVSQHMAKEEEQVFPLLLEKFSLEEQASLVWQFLCSIPVNMMTKFLPWLSTSISADESQDLRKCLSKIVPEEKLLQKVIFSWMEGRSRANTVENCVDHSQVRCSRNPLTHQNGKIKCACESTATGKRKYSTCIIDVSDTMTTHPIDEILFWHNAIKKELNEIAAQTRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKFSFSKEHAEEESQFNDFRSLIESIQSEGATSSSETEFYSTLCSHADHILETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLTSSLTEDEAQMFLKNMQLAAPSIDTALVTLFCGWACTARKDGLCLSSSVSGCCPAQRITDIEENIVQSSCPASALSDRDCSILADSDGTQQRSVKRNILGVHNEDVSEISESESTQKQCCSSRSCCVPALGVSRNNLGLGSLTTTKSLRSLSITASAPSINSSLFIWETDNSSSDVGSTERPIDTIFKFHKAIRKDLEYLDIESGKLSDGDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSELSVLHEVLVRTPMSEDLSENSFAIPDANDRDNIKKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQSKMMDTWKQATKNTMFNEWLNECLKESPVSTTQAEASERSTSQRGGDYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKAPSGESSSKQIEGCSPSFRDPEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATMEMMCMQCLTIQPVGSVCISPSCDGLTMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCDRKATSRFHWLYHKCGSCGSYNTRVIKTEATNSSCL 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00254 1241 Pfam Zinc-ribbon 1172 1229 IPR039512 -
Phco5g00254 1241 CDD Hr-like 305 434 - -
Phco5g00254 1241 CDD RING-H2_Pirh2-like 1124 1167 - -
Phco5g00254 1241 MobiDBLite consensus disorder prediction 882 904 - -
Phco5g00254 1241 SUPERFAMILY Zinc hairpin stack 1062 1118 IPR037275 -
Phco5g00254 1241 SUPERFAMILY RING/U-box 1122 1177 - -
Phco5g00254 1241 MobiDBLite consensus disorder prediction 965 984 - -
Phco5g00254 1241 FunFam Zinc finger protein-related isoform 1 1120 1169 - -
Phco5g00254 1241 ProSiteProfiles Zinc finger CHY-type profile. 989 1058 IPR008913 GO:0008270
Phco5g00254 1241 ProSiteProfiles Zinc finger RING-type profile. 1125 1167 IPR001841 -
Phco5g00254 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1119 1169 IPR013083 -
Phco5g00254 1241 SMART ring_2 1125 1166 IPR001841 -
Phco5g00254 1241 Pfam Hemerythrin HHE cation binding domain 302 436 IPR012312 -
Phco5g00254 1241 Pfam Hemerythrin HHE cation binding domain 650 813 IPR012312 -
Phco5g00254 1241 Pfam Hemerythrin HHE cation binding domain 53 176 IPR012312 -
Phco5g00254 1241 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 693 1237 - -
Phco5g00254 1241 MobiDBLite consensus disorder prediction 968 982 - -
Phco5g00254 1241 Pfam Ring finger domain 1124 1166 IPR001841 -
Phco5g00254 1241 Gene3D nmb1532 protein domain like 299 452 - -
Phco5g00254 1241 Gene3D nmb1532 protein domain like 44 194 - -
Phco5g00254 1241 Pfam CHY zinc finger 996 1071 IPR008913 GO:0008270
Phco5g00254 1241 Gene3D nmb1532 protein domain like 646 889 - -
Phco5g00254 1241 CDD Hr-like 48 174 - -
Phco5g00254 1241 ProSiteProfiles Zinc finger CTCHY-type profile. 1061 1124 IPR017921 -
Phco5g00254 1241 Gene3D - 1196 1237 - -
Phco5g00254 1241 SUPERFAMILY CHY zinc finger-like 988 1053 IPR037274 GO:0008270
Phco5g00254 1241 CDD Hr-like 652 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00254 Phco-Chr5 2071829 2080100 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03605 4 55918522 55929130 Phco5g00254 5 2071829 2080100 PCT