Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03605 ATGGCGACGCCGTTGGACGGAGGAGGAGTGGCGGTGCTCTCGAATTCGATCAACAAGGTGGACACCGCCTCGGCTCTCAAGGACGACTTGAAGTGCTCCAAACCGGAGTCGCCGATTTTGATTTTCTTGTTTTTTCACAAAGCAATTCGGAATGAGCTTGATGAGCTGCACCGGTTGGCCTTGGCATTCGCCACCGGAAACCGCTCCGACATTCAGCCGCTCTCCGAGCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTCCAATGCTGAAGACGAGGTGATATTTCCAGCTTTAGATATACGTGTGAAGAATGTAGCACAGACATATTCTCTCGAGCACAAGGGTGAAAACAACCTTTTTGATCATCTATTTGATCTTTTAAATTCTTCTATCAATAAGGATGAAACTTTTCCAAGAGAGTTAGCATCCTGCACAGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCAAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTTTCTCTGGAGGAACAGGCATCCTTAGTTTGGCAGTTCCTTTGCAGTATTCCTGTGAATATGATGGTCGATTTTCTACCATGGCTTTCAAAATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAAGATAGTGCCACAGGAGAAGCTTCTTCAGAAGGTTGTTTTCACCTGGATGGAAGGGAGAGGTAGCGTTAACACATTTGAAAGTTGTGTAGATCATTCTCAAGTTCTATGTAGTTCTAGGTCATTACCCCATCAGGTTGAGAAAGTAAACTGTGCTTGTGAGTCCACAACATGTGGAAAAAGGAAATATTCTGGATCTATGATAGATGTTTCTGATAGCACTGGAGAGCATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAAAAAGATTTAAGTGAGATAGCAGTGGAGGCCAGAAAGATACAACACTCTGGAGATTTTGCTAATCTGTCTGCTTTTAATGAAAGATTTCAATTTATAGCCGATGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCGGGCAGTAGATGGGGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGAAGTTTAATTGAAAGTATTCAAAGTGAAGGAGCATCATCTAATTCAGATGTTGAATTTTACTCCAAGTTATGCACGCATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTACTTCCTCTGGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTTTGTATCAAAGCTTATGCATGATGCCTCTTAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTAACTGAAGATGAAGCAAAGATGTTTCGGAGAAATATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTAGTTACACTCTTCTGTGGATGGGGTTGCAAGGCTCGTAATGAAGGTCAGTGTTTGTCTTCAGGTGCATCAGGTTTCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAAATATTGGTCCATTATCCTGTGCTTGTGCATCTGCATTATCCAATAGACATTGCTCAGTATTAGCTGAATCAGGAGAGAACAAAAAAGCAGTCAAACGAAACATAATGGAGTTGAACAAAAATGAAGATGTGCCAGAAAGTTCAGAGACTGAAAGCATTCAGAAACAATGTTGTAGTACTCGGTCTTGTTGCGTGCCAGGTTTGGGAGTGAGTAGTAACAATTTAGGATTGAGTTCTCTCTCTTCGCCACCCAAGTCCTTGCGCTCCTTGTCTTTCAGCTCTTCTGCTCCATCTATTAACTCCAGTCTGTTAGTTATGGAAACAGAGAGAAGCTCATGCAATGTGGGATGTACACAAAGACCAATTGATACAATCTTTAAATTCCATAAAGCCATACGCAAAGACTTGGAGTACCTTGATGTTGAATCAGGAAAGCTGAGTGATGGTGATGAGACAATTCTGCGTCAATTTAATGGAAGATTTCGACTCTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTCCCAGCTTTGGAATCCAAAGAGGCACTTCATAATGTGAGTCATTCATACATGCTAGACCATAAGCAGGAAGAAAAATTGTTTGAAGATATTTCCTGTGTTCTTTCAGAGTTTTCCGTCCTTCATGAATCCTTGCAGATGATCCACATGGCTGAGAGTTTAAGTGAAAGTAATTTTGGAACCTCTGATGGCAATACTAGTGATGTCATCAAAAAATATAATGAACTTGCTACTAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATCTCTTCAGAGAAGAATGTGAACTGTGGCCATTGTTTGGGAGACATTTTACTGTGGAAGAACAAGACAAGATAGTGGGTCGAATAATTGGAACAACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACATCTGCTCTTACTCAGGATGAACAGAACAGAATGATGGATACATGGAAGCAAGCAACAAAGAACACTATGTTCAATGAATGGCTTAGTGAATGCTGGAAAGAGAGTCCAGTGTCTATACCACAGGCTGAAGCATCAGATCATAGGACTTTTCGGAGAGGTGCTGAATATCGAGAAAGCTTGGGCCACAATGATCCAATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTATATCGAGACTCAACACTTGATCCAAGGAGAAAGGCCTATCTTGTGCAGAATTTATTGACAAGTCGCTGGATAGCTGCCCAGCAGAAATCACCTAAAGCTCTGTCGGAAGGATCATCTAACAGTGTAGAAATAGTAGGACTCTCACCATCATTTCGAGACCCAGAAAAACATGTATTTGGGTGTGATCACTATAAGAGAAATTGCAAGCTTCGGGCTGAATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCGCTGCCTGAATATACAGCCAATAGGGCCTACGTGCATGACACCTTCATGTAACGGATTTTCAATGGCGAAGTACTATTGCAGTATATGCAAATTTTTTGATGATGAAAGGAACGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACAAGGGCTTGGGATCGATTATTTTCATTGCATGAAATGCAATTGTTGCCTGGGGATTAAATCAGCATCTCATAAATGTCTCGAGAAAGGTTTAGAAATGAACTGCCCAATTTGTTGCGATGACTTGTTCACTTCAAGTGCTACGGTCAGAGCTCTACCTTGCGGCCACTATATGCATTCGGCTTGCTTCCAGGCATACACGTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCCTTTTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGAACGCTGTCAGGACGTACTCTGCCATGACTGTGGTCGGAAGGGCTCTTCACGCTTTCACTGGTTGTACCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTTATCAAGTGTGAGACGTCAAACTCCAGCTGCTCTCAGCGTGCTTCTTTTGATGGGAGGTAG 3738 0.4208 MATPLDGGGVAVLSNSINKVDTASALKDDLKCSKPESPILIFLFFHKAIRNELDELHRLALAFATGNRSDIQPLSERYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGENNLFDHLFDLLNSSINKDETFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMVDFLPWLSKSISPDESQDLRNCLIKIVPQEKLLQKVVFTWMEGRGSVNTFESCVDHSQVLCSSRSLPHQVEKVNCACESTTCGKRKYSGSMIDVSDSTGEHPIDEILLWHNAIKKDLSEIAVEARKIQHSGDFANLSAFNERFQFIADVCIFHSIAEDKVIFRAVDGEFSFFQEHAEEESQFNDFRSLIESIQSEGASSNSDVEFYSKLCTHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKMFRRNMQLAAPATDSALVTLFCGWGCKARNEGQCLSSGASGFCPAQRLSDIEENIGPLSCACASALSNRHCSVLAESGENKKAVKRNIMELNKNEDVPESSETESIQKQCCSTRSCCVPGLGVSSNNLGLSSLSSPPKSLRSLSFSSSAPSINSSLLVMETERSSCNVGCTQRPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSEFSVLHESLQMIHMAESLSESNFGTSDGNTSDVIKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNRMMDTWKQATKNTMFNEWLSECWKESPVSIPQAEASDHRTFRRGAEYRESLGHNDPMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKALSEGSSNSVEIVGLSPSFRDPEKHVFGCDHYKRNCKLRAECCGKLFTCRFCHDNVSDHSMDRKATLEMMCMRCLNIQPIGPTCMTPSCNGFSMAKYYCSICKFFDDERNVYHCPFCNLCRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRERCQDVLCHDCGRKGSSRFHWLYHKCGFCGSYNTRVIKCETSNSSCSQRASFDGR 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03605 1245 Pfam Zinc-ribbon 1168 1225 IPR039512 -
Phco4g03605 1245 SUPERFAMILY RING/U-box 1119 1166 - -
Phco4g03605 1245 CDD RING-H2_Pirh2-like 1120 1163 - -
Phco4g03605 1245 Gene3D nmb1532 protein domain like 642 880 - -
Phco4g03605 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1117 1165 IPR013083 -
Phco4g03605 1245 Coils Coil 545 565 - -
Phco4g03605 1245 CDD Hr-like 298 427 - -
Phco4g03605 1245 Pfam Ring finger domain 1120 1162 IPR001841 -
Phco4g03605 1245 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Phco4g03605 1245 SMART ring_2 1121 1162 IPR001841 -
Phco4g03605 1245 CDD Hr-like 41 167 - -
Phco4g03605 1245 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Phco4g03605 1245 SUPERFAMILY CHY zinc finger-like 985 1048 IPR037274 GO:0008270
Phco4g03605 1245 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Phco4g03605 1245 SUPERFAMILY Zinc hairpin stack 1058 1114 IPR037275 -
Phco4g03605 1245 CDD Hr-like 647 807 - -
Phco4g03605 1245 Gene3D - 1192 1234 - -
Phco4g03605 1245 FunFam Zinc finger protein-related isoform 1 1116 1165 - -
Phco4g03605 1245 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 688 1234 - -
Phco4g03605 1245 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Phco4g03605 1245 Pfam Hemerythrin HHE cation binding domain 645 808 IPR012312 -
Phco4g03605 1245 Pfam Hemerythrin HHE cation binding domain 295 429 IPR012312 -
Phco4g03605 1245 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Phco4g03605 1245 Gene3D nmb1532 protein domain like 36 187 - -
Phco4g03605 1245 Gene3D nmb1532 protein domain like 298 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03605 Phco-Chr4 55918522 55929130 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03605 4 55918522 55929130 Phco4g03605 4 55918522 55929130 ECH
Phco4g03605 4 55918522 55929130 Phco5g00254 5 2071829 2080100 PCT