Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00244 ATGAGCTTGAAGAAAAGGGTCCTTTCAATTAACATTGAAGAGGCTGCTGTGGACTTTTTCAACCATCTCTTGCAGGAGAAGCCCAGAATTCCGGTCTTCATTCCTCTGATTCTGATTGCTTGGGCTGTTGAGAGATGGCTCTTCTCTGCCTCCTCTTGGGTTCCTCTTGCTCTTGCTGTGTGGACTACTATACAGTATGGGAGATACCAACGCAAACTACTCGTGGAGGACTTGGATAAGAAATGGAAGAGGATCATACTGAATGTCTCGCCCATCACACCATTGGAGCATTGTGAGTGGTTGAATAAGTTATTGACAGAAGTCTGGTCCAACTATTTTAATGCCAAGTTTTCAATAAGGCTATCTGCTATTGTTGAGAAACGTATAAGGCTCCGGAAACCAAGACTTCTGGAACGAGTTGAGTTGCAGGAGTTTTCGCTAGGATCATGCCCTCCTAGCTTGGCTCTGAGAGGGATGCGTTGGTCAACTATTGGTGATCAGCGATTTCTGCAACTGGGTTTTGATTGGGATACAAGTGAAATGAGCATTTTATTGCTTGCTAAGCTTGCAAAGCCGTTGATTGGAACTGCTCGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTTGCTACACCAATTCTAGATGGAAAAGCACTTCTTTACTCATTCGTATCAACTCCTGAGGTGAGAATAGGAGTTGCCTTTGGAAGCGGTGGGAGCCAATCTCTTCCCGCCACTGAATGGCCTGTTGTTTCTTCTTGGCTGGAAAAACTTTTTGCTGACACCCTGGCAAAAACCATGGTGGAACCTCGGCGACGTTGTTTCACTTTGCCTGCTGTTGATTTAAGGAAAAAAGCAGTTGGAGGCATTATATATATTAGAGTGATTTCAGCGAATAAACTTTCTGGGAGTTGCTTTAAGACATCTAGGAGGCAACCAAATGGGGCAACCAATGGTTATTCAGAGGACAATTTTGATGACAAGGATCTGGAGACATTTGTAGAAGTAGAAGTTGAGGAATTAACCAGGAGAACAGATGTCAGAATGGGTTCAACCCCCAGATGGGATGCACCATTTAATATGGTTTTACATGATAATACAGGAACTCTTCGTTTCAATCTTTATCAGAGCCATCCCAGCAATGTGAGGTGTGACTATCTAGCAAGTTGTGAAATCAAGTTGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCCGTAGGACCTGATTTTGGAGTCATTGCAAAGCAGGCACAGTTCTGTGGAGAAGAAATTGAAATGGTTGTCCCATTTGAGGGCCCCAACTCTGCAGAGTTGAAGGTGAGCATTGTAGTCAAAGAGTGGCAATTTTCTGATGGTTCGCATAGCTTGAACAGTATCCGGAGTACCAACTCTCAGCAGTCAATTAATGGATCACCAAATTTTCAGTTAAAAACTGGAAGGAAAATTAGTGTAACTGTTGTGGAAGGAAAGGATCTTGCTGCAAAAGACAAATCTGGAAAATTTGACCCTTATATCAAATTGCAGTATGGAAAGGTTGTCCAGAAATCAAGAACTGGTCATACCCCAAATCCTGTCTGGAATCAGACATTTGAATTCGAGGAGATTAGTGGTGGGGAATACTTAAAAATAAAAGGCTTTTCTGAAGAAATTTTTGGCGATGAAAACATTGGTAGTGCTCATGTGAATTTGGAAGGATCGGTTGATGGCTCAGTCAGGGATGTATGGATCCCTCTTGAAAGAGTGCGCTCTGGAGAATTAAGACTTCAAATATCGGTTAGAGTGGATGACCAAGAAGGATCGAAGAGTTTCGGTTCTGGCTCAGGCAATGGTTGGATTGAACTTGTTCTGATAGAGGGAAGGGATCTTGTTGCTGCCGATCTCAGAGGCACAAGTGATCCATATGTGAGGGTACACTACGGAAGCTTTAAGAAAAGGACAAAGGTCATATACAAAACTCTTAATCCTCAGTGGAACCAGACCTTAGAGTTCTCTGATGATGGAAGTCCCCTAATGCTTTATGTCAAAGATCACAATGCATTATTGCCCACATCAAGTATAGGTGAATGTGTTGTAGAATATCAAAGGTTGCCTCCAAACCAGATGGCTGACAAGTGGATACCTCTCCAAGGGGTGAAAAGGGGTGAAATTCATGTCCAAATCACTAGAAAAGTTCCAGAGTTGCAGATGAGGCAAAGTCTAGACTCTGAACCTTCCTTGAGTAAACTACACCAAATTCCAAACCAGATAAAACAGATGATGATCAAGTTCAGGTCCTTCATAGAGGATGGAAATCTTGAAGGACTCTCTACAACATTGAGTGAGCTAGAAACTCTTGAGGATACACAGGAAGGGTATATATCTCAGCTGGAGACTGAACAAATGCTTCTTCTCAGCAAAATAAAGGAACTTGGCCAAGAGATCATTAATTCTTCTCCTTCCCTCAGCAGAAGATCTTCTTCAGCTGGAAACTGA 2481 0.4248 MSLKKRVLSINIEEAAVDFFNHLLQEKPRIPVFIPLILIAWAVERWLFSASSWVPLALAVWTTIQYGRYQRKLLVEDLDKKWKRIILNVSPITPLEHCEWLNKLLTEVWSNYFNAKFSIRLSAIVEKRIRLRKPRLLERVELQEFSLGSCPPSLALRGMRWSTIGDQRFLQLGFDWDTSEMSILLLAKLAKPLIGTARIVINSLHIKGDLLATPILDGKALLYSFVSTPEVRIGVAFGSGGSQSLPATEWPVVSSWLEKLFADTLAKTMVEPRRRCFTLPAVDLRKKAVGGIIYIRVISANKLSGSCFKTSRRQPNGATNGYSEDNFDDKDLETFVEVEVEELTRRTDVRMGSTPRWDAPFNMVLHDNTGTLRFNLYQSHPSNVRCDYLASCEIKLRHVEDDSTIMWAVGPDFGVIAKQAQFCGEEIEMVVPFEGPNSAELKVSIVVKEWQFSDGSHSLNSIRSTNSQQSINGSPNFQLKTGRKISVTVVEGKDLAAKDKSGKFDPYIKLQYGKVVQKSRTGHTPNPVWNQTFEFEEISGGEYLKIKGFSEEIFGDENIGSAHVNLEGSVDGSVRDVWIPLERVRSGELRLQISVRVDDQEGSKSFGSGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGSFKKRTKVIYKTLNPQWNQTLEFSDDGSPLMLYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKRGEIHVQITRKVPELQMRQSLDSEPSLSKLHQIPNQIKQMMIKFRSFIEDGNLEGLSTTLSELETLEDTQEGYISQLETEQMLLLSKIKELGQEIINSSPSLSRRSSSAGN 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00244 826 CDD C2 615 711 - -
Phco5g00244 826 SMART C2_3c 484 578 IPR000008 -
Phco5g00244 826 SMART C2_3c 292 408 IPR000008 -
Phco5g00244 826 SMART C2_3c 614 708 IPR000008 -
Phco5g00244 826 Coils Coil 789 809 - -
Phco5g00244 826 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 94 280 IPR031468 GO:0008289
Phco5g00244 826 PANTHER OS01G0128800 PROTEIN 9 822 - -
Phco5g00244 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 607 724 IPR035892 -
Phco5g00244 826 ProSiteProfiles C2 domain profile. 463 579 IPR000008 -
Phco5g00244 826 Gene3D C2 domain 290 424 IPR035892 -
Phco5g00244 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 325 404 IPR035892 -
Phco5g00244 826 CDD SMP_SF 117 277 - -
Phco5g00244 826 ProSiteProfiles C2 domain profile. 596 709 IPR000008 -
Phco5g00244 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 483 594 IPR035892 -
Phco5g00244 826 Gene3D C2 domain 603 726 IPR035892 -
Phco5g00244 826 Gene3D C2 domain 468 598 IPR035892 -
Phco5g00244 826 Pfam C2 domain 484 581 IPR000008 -
Phco5g00244 826 Pfam C2 domain 615 711 IPR000008 -
Phco5g00244 826 Pfam C2 domain 292 402 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00244 Phco-Chr5 1993295 2000558 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00244 5 1993295 2000558 Phco4g03593 4 55836291 55842369 ECH
Phco5g00244 5 1993295 2000558 Phco5g00244 5 1993295 2000558 ECH
Phco4g03593 4 55836291 55842369 Phco5g00244 5 1993295 2000558 PCT