Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03593 ATGAGTAGTACCAGTAGCAAGAAAAGGTTCAATCCTATTCATCTTGAAGAGGCTGCAGTGGACTTGTTAAACCATGTGGTGAAGGTGAAGGAGAATATGGGTTGGATTTCACTCCTCTTCCCACTCATTTTCATTGCTTGGGCTATTCACAGATGGCTATTTTCTTTCTCCAATTGGCTTTCCCTTGCCCTTGCTCTCTGGGCATGTATGCAATATGAGAAGTATCAGCGCAAGCTACTGGAGGAAGACTTGAATAAGAAATGGAATCGGATCCTACTCAACACATCGCCAGTGACACCATTAGAGCACTGCGACTGGTTGAATCTGCTATTGACGCAAATATGGTCCAACTATTTTAATCCCAAGTTCTCAAGAAGGTTATCAGCCATAGTTGAAAAACGTCTGAAGCTCCGAAAACCAAGATTTATAGAAAAAGTTGAGGTGCAAGGCTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCTGGTGATCAGCGAGTCCTGAAATTGAGTTTTGATTGGGATACAAGCGAGATGAACATTTTGATGCTTGCTAAGCTTTCCGTTGGAACGGCCAGAATTGTGATTAACAATCTTCATATCAAGGGTGAGCTTATGGTGACTCCAATTCTAGATGGAAATGCACTTTTGTATTCATTTTCATCCACACCTGAGGTGAGAATAGGAATTGCCTTTGGAAGCGGAGCAAGCCAATCAGCCACTGAGTTGCCCGGGGTTTCTCCATGGCTGGATAAACTTTTTACTGATACGTTGGTTAAAACCATGGTGGAACCTCGACGCCGTTGTTTCAGTTTGCCTGTGGTTAATTTGAGGAAAACTGCTGTTGGAGGCATTATATATGTGTCAGTGATTTCAGCAAACAAACTTTCTTGGAGTTGCTTCAAGAGTAGCCGATCTTTGAGGCAACAGAATAGCACAATAAGTGGATGTTCAGAAACAAACCTGGATGACAAGGACCTACAGACATTTATAGAGGTTGAGGTGGAGGAATTGACAAGGAGGACTGGTCTTAGTCATGGTTCAAATCCAACGTGGGATACAACATTTAATATGGTTTTACATGATAATACAGGAATTGTTCGCTTCAATCTTTATGAGCGTCCCTCTAGTGGTGTAAAGTGTGACCACCTAGCAAGTTGTGAAATCAAGATGAGGCATGTTGAAGACGATTCAACAATAATGTGGGCAATAGGGCCTGATTCTAGTGCAATAGCGAAACATGCAAAGTTTTGTGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGTACCAACTCAGCAGAGTTAAAGGTGAAGATTGTAGTGAAAGAGTGGCAGTTTTCTGATGGTTCACATAGCTTGAACAACCTCCGTGCTAATTCTCAGCGATCACTTATTGGATCATCAACTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACAGTTGTAGAAGCCAAGGGTCTCATTACAAAAGACAAATCTGGAAAAGTTAGCCCATACGTTAAATTGCAATATGGAAAGGTTGGTAAGAGAACAAAGGTTGCTCCTTCTACTACTAGTACTACTACTACTACAAATCCTGTCTGGAATGAATCATTTGATTTTGATGAGAATGATGGTGATGAATACCTAAATGTAAAATGCTTCAGTGAAGAAATTTTTGGAGATGAAAATATTGGTACTGCCAATGTAAATTTGGAAGGACTGGGGGACGGGTCAATCAAGGATGAATGGATCCCTCTTGAAGGAGTGAATTCTGGTGAATTAAGACTTCAAATTGAAGTAGTTATGGTGCAGGACCAAGAAGGATCAACGGGTTCAGCCAATGGTTGGATTGAACTTGTTGTAATCGAAGCAAGAGATCTTATTGCTGCCGATCTTCGAGGAACAAGTGATCCTTATGTGAGGGTGAACTATGGAAATTTGAAACGGAGGACAAAGGTTATACACAAAACTCTCAACCCTCGTTGGAACCAAACCTTAGAGTTCCTTGACAATGGCAGTCCCCTGACCCTGCATGTTAGGGATCACAATGCTTTACTGCCCACATCAAGTATAGGGGAATGTGTTGTAGAGTATCAAAGGTTGCCTCCAAACCAGATGTCTGAGAAATGGATACCTCTCCAAGGGGTAAAAAGTGGCGAGATACACATCCAAATTACAAGAAAAGTTCCTGAGATGCAAACAAGAAGTTCTCTAGACTCTCAACCATCTTCGTTAAGTAAATCACACCAAATTCCTACCCAGATGAGAGAGATGTTGAAAAAGTTTCGATCATTAATAGAGGATAGAAATCTTGAAGGACTGGCAACAACTTTGAGCGAGTTAGAAAGTCTGGAGGATACAATGGAAGGGTACGTAGCACAGCTAGAGACCGAGCAAATGCTTCTTCTGAGCAAAATAAATGATCTGGGTCAGGAGTTCCTCAATTCTTCTTCTTCCCTCTCTAGTAGTCCTTCTCAAAATGGAAATTAA 2502 0.4153 MSSTSSKKRFNPIHLEEAAVDLLNHVVKVKENMGWISLLFPLIFIAWAIHRWLFSFSNWLSLALALWACMQYEKYQRKLLEEDLNKKWNRILLNTSPVTPLEHCDWLNLLLTQIWSNYFNPKFSRRLSAIVEKRLKLRKPRFIEKVEVQGFSLGSCPPSLGLQGMRWSTSGDQRVLKLSFDWDTSEMNILMLAKLSVGTARIVINNLHIKGELMVTPILDGNALLYSFSSTPEVRIGIAFGSGASQSATELPGVSPWLDKLFTDTLVKTMVEPRRRCFSLPVVNLRKTAVGGIIYVSVISANKLSWSCFKSSRSLRQQNSTISGCSETNLDDKDLQTFIEVEVEELTRRTGLSHGSNPTWDTTFNMVLHDNTGIVRFNLYERPSSGVKCDHLASCEIKMRHVEDDSTIMWAIGPDSSAIAKHAKFCGDEVEMVVPFEGTNSAELKVKIVVKEWQFSDGSHSLNNLRANSQRSLIGSSTLLSKTGRKLKITVVEAKGLITKDKSGKVSPYVKLQYGKVGKRTKVAPSTTSTTTTTNPVWNESFDFDENDGDEYLNVKCFSEEIFGDENIGTANVNLEGLGDGSIKDEWIPLEGVNSGELRLQIEVVMVQDQEGSTGSANGWIELVVIEARDLIAADLRGTSDPYVRVNYGNLKRRTKVIHKTLNPRWNQTLEFLDNGSPLTLHVRDHNALLPTSSIGECVVEYQRLPPNQMSEKWIPLQGVKSGEIHIQITRKVPEMQTRSSLDSQPSSLSKSHQIPTQMREMLKKFRSLIEDRNLEGLATTLSELESLEDTMEGYVAQLETEQMLLLSKINDLGQEFLNSSSSLSSSPSQNGN 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03593 833 MobiDBLite consensus disorder prediction 735 755 - -
Phco4g03593 833 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 100 281 IPR031468 GO:0008289
Phco4g03593 833 CDD SMP_SF 123 278 - -
Phco4g03593 833 Pfam C2 domain 621 717 IPR000008 -
Phco4g03593 833 Pfam C2 domain 294 405 IPR000008 -
Phco4g03593 833 Pfam C2 domain 486 590 IPR000008 -
Phco4g03593 833 Gene3D C2 domain 607 732 IPR035892 -
Phco4g03593 833 Gene3D C2 domain 474 606 IPR035892 -
Phco4g03593 833 CDD C2 621 717 - -
Phco4g03593 833 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 616 730 IPR035892 -
Phco4g03593 833 Coils Coil 778 805 - -
Phco4g03593 833 ProSiteProfiles C2 domain profile. 468 588 IPR000008 -
Phco4g03593 833 ProSiteProfiles C2 domain profile. 594 715 IPR000008 -
Phco4g03593 833 PANTHER OS01G0128800 PROTEIN 14 830 - -
Phco4g03593 833 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 287 407 IPR035892 -
Phco4g03593 833 CDD C2 487 590 - -
Phco4g03593 833 SMART C2_3c 293 411 IPR000008 -
Phco4g03593 833 SMART C2_3c 620 714 IPR000008 -
Phco4g03593 833 SMART C2_3c 486 587 IPR000008 -
Phco4g03593 833 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 485 604 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03593 Phco-Chr4 55836291 55842369 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00244 5 1993295 2000558 Phco4g03593 4 55836291 55842369 ECH
Phco4g03593 4 55836291 55842369 Phco4g03593 4 55836291 55842369 ECH
Phco4g03593 4 55836291 55842369 Phco5g00244 5 1993295 2000558 PCT