Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00243 ATGGCGTTTCCCAACACTTGTAAACTCTCAGAATTTTCTTTTTCATCACTCAACCCTCCTTCTCCTTCTCGCTCTTTCCACAAATTCCCATTTCGCACACTCACCTTTGCTTCTCTCCCAACCCCTAAACCTAACGCCTCTGCACCCTGGCTTACCAAATCCCCCTCTCCCAGAAAGGTCACCGAGCCCCTCACTGTCGACGACCCAATTCACCGCACAACCCCCAAACAACCGCAGAACGCCGTGGAGAGAATCGTCCTTCGGTTACGCAACTTGGGTCTGCTTTCAGAAGAAGAAGAACAACAACCAGAACAACAGGAAGAATTCCCGGCAAGTAATCCGGCGCCGGTGACCGGAGATGAGAGGCTGAGCGAGTTGCTCCGGCGGGACTGGGTAAGGCCGGACGCCGGGCTGGTGGGCGAGGATGAGGAGGAGGAGATGATGCTGCCGTGGGAGAGGGAGGAGGAGAAGGTTGTGGTGGTTAGGAGTGAAAGGGATGAAGAAGGGTTGAAGAAGAGGAGGCTTACGGCTCCTAGTTTGGCTGATTTGACCCTTGAGGATGAGTTGCTGAGGAGGTTGAGGAGAGAGGGGATGCATGTGAGGGAGAGGGTGAGTGTCCCCAAGGCTGGACTCACTCAGGAGGTTATGGAAAAGATTCATAAGAGGTGGATGAAGGAGGAATTGGTGAGACTCAAGTTTCATGAGGAACTTGCAAAGGATATGAGGAAGGCTCATGAGATTGTTGAGCGTCGAACTGGCGGATTGGTCACATGGAGGTCAGGGAGTGTTATGATGGTGTATCGTGGTATTGATTACCAAGGGCCTGACTCAAGGAAGGAAGTTAATGATAAGAAAGGTAATGACTTTTTTGTGCCTGATGTCTCATCAGGAAGTTTGTTGAAAAGTGAAGTCAGTAATGCAGCCACATCTCGGGAAAAAAGTGAGGTGGTTGTGAGGGAGCAAGAACAGTCTAAGAATGTCACTGAGGCGGAAACAGAGTACAATGCACTTCTTGATGAATTAGGTCCCCGTTTTGATGGATGGTGGGGTACGGGGATACTCCCTGTTGATGCTGATTTACTTCCAAGAACAGTTCCAGGTTACAAAACACCGTTTAGGCTTCTTCCTACAGGAATGCGTTCTCGGCTGACAAATGCAGAGATGACCAATTTAAGGAAACTTGCAAAATCAATTCCTTGTCATTTTGCTTTAGGGAGAAATAGAAATCACCAAGGTCTAGCATGTGCTATTCTTAAGCTTTGGGAGAAAAGTTTAGTTGCAAAGATTGCTGTCAAACCTGGCATCCAAAACACAAACAATGAACTGATGTCTGAGGAGCTGAAGATGTTAACAGGAGGTACCTTGCTGCTAAGGAATAAATATTTCATTGTTATATACCGTGGGAAAGACTTCGTTCCAATAAGTGTGGCTGCTGTTTTAGCTGAAAGAGAGGAAATGACAAAGCAAGTGCAGGATGTTGAAGACAAGTTCCGGTACAGAGCAGTGAATGCAATTCCATCAGGGCAAGGTGAAGCAACAGTACAGGCTGGGACTTTAGCAGAGTTCTACGAGGCCCAGGCTCGATGGGGCAGGGAAATATCTCCTGGAGAACGTGAGAAGATGGTGGAAGAAGCTGCCAAAGCCAAGACTGCTAAGCTTGTCAGAAAAATTGAACATAAACTATTTATAGCCCAGACCAAAAAGCATAGAGCAGAAAAGCTCTTAGCTAAAATAGAATCATCGATGGTTCCAGCTGGTCCTGATTATGACCAAGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTAAAGTTGGTTTAAGAATGAAACCATACTTACCACTTGGTATACGTGGTGTTTTTGATGGTGTCGTCGAGAATATGCATTTGCATTGGAAACACCGAGAACTTGTAAAATTGATGACAAAACAAAAGACTCTTGCTTTTGTGGAAGACACAGCAAGGTTACTTGAATATGAGAGTGGCGGAATACTGGTTGCAATAGAAAAAGTTTCCAAAGAATTTGGTCTTATTTACTATCGTGGAAAGAATTATAAGCGGCCAATTAATCTGAGGCCAAGAAACCTTCTAACGAAGGGAAAGGCATTAAAGCGGCATGTAGCCATGCAACGTCACGAGGCTCTGAGTCAGCATATTACTGAACTGGAAAAGACTATAGAAGAATTGAAAAAAGAACTTGATAAGCCTCAAGATTTGGATGATGAAGATGGGTCGAGCACAGACGAAGAGGATCATAAGCAAATAGACAATATCTCAGAATTGACCCTTAGTGAGAATGAAGATTCTGATGGTTTTGATGATGAGGACAAAAGCGACTGGTTAGATGATGAGGAAGAAAGTGATTGGGAAGATGATGAGAACCTGAGTTTTCAAAATTCGTAA 2403 0.4515 MAFPNTCKLSEFSFSSLNPPSPSRSFHKFPFRTLTFASLPTPKPNASAPWLTKSPSPRKVTEPLTVDDPIHRTTPKQPQNAVERIVLRLRNLGLLSEEEEQQPEQQEEFPASNPAPVTGDERLSELLRRDWVRPDAGLVGEDEEEEMMLPWEREEEKVVVVRSERDEEGLKKRRLTAPSLADLTLEDELLRRLRREGMHVRERVSVPKAGLTQEVMEKIHKRWMKEELVRLKFHEELAKDMRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDSRKEVNDKKGNDFFVPDVSSGSLLKSEVSNAATSREKSEVVVREQEQSKNVTEAETEYNALLDELGPRFDGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKPGIQNTNNELMSEELKMLTGGTLLLRNKYFIVIYRGKDFVPISVAAVLAEREEMTKQVQDVEDKFRYRAVNAIPSGQGEATVQAGTLAEFYEAQARWGREISPGEREKMVEEAAKAKTAKLVRKIEHKLFIAQTKKHRAEKLLAKIESSMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFGLIYYRGKNYKRPINLRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEELKKELDKPQDLDDEDGSSTDEEDHKQIDNISELTLSENEDSDGFDDEDKSDWLDDEEESDWEDDENLSFQNS 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00243 800 Coils Coil 712 739 - -
Phco5g00243 800 MobiDBLite consensus disorder prediction 766 793 - -
Phco5g00243 800 Gene3D - 382 477 IPR035920 -
Phco5g00243 800 Gene3D - 183 284 IPR035920 -
Phco5g00243 800 Pfam CRS1 / YhbY (CRM) domain 595 670 IPR001890 GO:0003723
Phco5g00243 800 Pfam CRS1 / YhbY (CRM) domain 186 268 IPR001890 GO:0003723
Phco5g00243 800 Pfam CRS1 / YhbY (CRM) domain 383 467 IPR001890 GO:0003723
Phco5g00243 800 ProSiteProfiles CRM domain profile. 381 478 IPR001890 GO:0003723
Phco5g00243 800 MobiDBLite consensus disorder prediction 38 54 - -
Phco5g00243 800 Gene3D - 594 698 IPR035920 -
Phco5g00243 800 Coils Coil 231 251 - -
Phco5g00243 800 ProSiteProfiles CRM domain profile. 183 279 IPR001890 GO:0003723
Phco5g00243 800 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 35 776 IPR045278 GO:0000375|GO:0003729
Phco5g00243 800 FunFam CRM-domain containing factor CFM3B, chloroplastic 593 695 - -
Phco5g00243 800 Coils Coil 320 340 - -
Phco5g00243 800 MobiDBLite consensus disorder prediction 38 78 - -
Phco5g00243 800 FunFam CRS2-associated factor 1, chloroplastic 382 478 - -
Phco5g00243 800 SUPERFAMILY YhbY-like 593 691 IPR035920 -
Phco5g00243 800 ProSiteProfiles CRM domain profile. 592 692 IPR001890 GO:0003723
Phco5g00243 800 MobiDBLite consensus disorder prediction 732 800 - -
Phco5g00243 800 Coils Coil 476 496 - -
Phco5g00243 800 FunFam CRS2-associated factor 1, chloroplastic 184 279 - -
Phco5g00243 800 SMART CRS1_YhbY_2 594 681 IPR001890 GO:0003723
Phco5g00243 800 SMART CRS1_YhbY_2 383 467 IPR001890 GO:0003723
Phco5g00243 800 SMART CRS1_YhbY_2 185 268 IPR001890 GO:0003723
Phco5g00243 800 SUPERFAMILY YhbY-like 383 474 IPR035920 -
Phco5g00243 800 MobiDBLite consensus disorder prediction 97 119 - -
Phco5g00243 800 SUPERFAMILY YhbY-like 184 274 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00243 Phco-Chr5 1985609 1990828 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00243 5 1985609 1990828 Phco5g00243 5 1985609 1990828 ECH
Phco4g03592 4 55830501 55835238 Phco5g00243 5 1985609 1990828 PCT