Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03592 ATGCGTTTGAACCTCACAAATGCTTTACTATCATCACTCCCACTCGCTTTACCCTCTTCCCACGCTCTCTTCGCCTCTTCCAAATTCAAATTCACATTCCCACTCGGAATTTGCATTCGCGTTCGCGCTCTCAACACCTTCTCCTCCCTTCAAACCACTCGCCACGACGACCACGACGATTTGTTCGCCCCAATTCCCACTCCCCGACACGTTGACAAAGCCGCCAACGCCATCGAGAGAATTGCCCTACGCTTGCGCAACTTAGGGTTAGCCTCCTCCGACCACGCCGACGACGACGATTTCCTGCGCCGCGAATGGCTTCGTCCCGATGAGGCGCTTTTGCCGTGGGACAAGCGAGAAGGGGAAGAGTACGAGGAGCACGAGGAACAGCAGAAGGAGAAGCTAAAGAAGAAGAGTGTTAATGCAGCGACACTGGCGGAGAAAACGCTGGAGGAGGAGGAGATGCGGCGGTTGCGAACGCTGGGAATGAGTCTTAAGGAGAAGGTCACTATCCCCAAAGCTGGCCTAACCCGAGCCGTGCTCGACAAGATTCATCGTCAGTGGAGCAACTGCGAGTTGGTGAGGCTCAAGTTTCACGAGTTTCTTGCTCAGAACATGAAGTTGGCTCATCAAATTGTCGAGTGTAGAACTAGAGGGTTAGTTATATGGAGGTCGGGGAGTTATATGTGGGTATACCGAGGTAAAAATTACCAAGGGCCGATGCAACCAAATGAAAAGGATGGAGATGATCAAATTCCTGTGGCGGCGGATGGTGATGCAGCGCTGTTGCTGGAAAAGAGTGAGGAAGTTTTCTTGAAGGAGGAGAAGATGACGCCGGAAGAAGTGGAGTTTAACAGGATGCTTGATGACTTTGGTCCTCGTTTTGTTGAATGGTGGGGCACTGGAATACTTCCAATTGATGCTGATTTGCTTGCCCCCACAGTTCCTGGTTACAAGACGCCTCTTAGGCTTCTTCCTGCTGGAATGCATCCACGATTGACCAACGATGAACTCACAAATATGCGGAAACTTGCTAAATCTCTTCCTTGTCACTTTGCCTTAGGGAGAAATAGAAATCTTCAAGGTCTGGCATCTGCTATTCTCAGGCTTTGGGAGAAAAGTTTAGTTGCAAAGATCGGAGTCAAGCGTGGTATTGTGAATACAAACAATGAACTGATGGCTCAGGAGCTGAAGAAATTAACAGGAGGTACTTTACTTCTGCGGAACAAATATTACATTGTAATATATCGTGGGAGGGATTTTGTTCCAACCAGTGTGGCTGCTGTTATTGCTGAAAGACAGGAAATGACAAAACATGTGCAGGATGTTGAGGAGAAGGTGCGGTGCAAAGTTCATGATGTAGCTCCTTCAAGGGAAGATGAATCAAAATCCCAAGCAGGATCATTGGCTGAGTTCTTTGAGGCTCAGGCATGCTGGGGAAGGGATATATCTACTGAAGAACGTGAGAGGATGAGGCAAGAGGTTACCAAAGCCAAGAATGATAAGCTTGCCAAAAAAAATGAATGTAAACTAGCTGTTGCCCAAGCCAAAAGGCTTACAGCAGAAAAGCTATTAGCGAAAATAGAAGCATCTCTGGTTCCAGTTGGTCCTGATTATGACAAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTTCAGTTGGTTTGAGAATGAAGGCATACTTGCCACTTGGTATACGTGGTGTTTTTGATGGTGTCATTGAGAATATGCATTTGCACTGGAGGCATCGAGAACTTGTTAAATTAATAACAAAGCAAAAGACCCTTGCTTTTGTTGAAGACACAGCTAGGTTACTGGAATATGAGAGTGGTGGAATACTAGTAGCAATAGATAAAGTTCCTAAAGGATTTTCTCTTATTTACTATCGGGGAAAGAATTATAGGCGACCTGTGACTCTAAGGCCTAGAAACCTTCTAACAAAGGCAAAGGCATTGCAGCGGTCAATAGCCATGCAACGGCATGAGGCTCTGAGTCAGCATGTCACTGAATTGGTGGGAAAAATAGAAAAAATGAAAAAAGAACTTAGTGAGGATGAATTCTCTGATGGAGATGACAATCGTGGTGATTTCAATGGCGAGGAACACACTGATTACAAGAACGATCAGCTAGCATAG 2139 0.4614 MRLNLTNALLSSLPLALPSSHALFASSKFKFTFPLGICIRVRALNTFSSLQTTRHDDHDDLFAPIPTPRHVDKAANAIERIALRLRNLGLASSDHADDDDFLRREWLRPDEALLPWDKREGEEYEEHEEQQKEKLKKKSVNAATLAEKTLEEEEMRRLRTLGMSLKEKVTIPKAGLTRAVLDKIHRQWSNCELVRLKFHEFLAQNMKLAHQIVECRTRGLVIWRSGSYMWVYRGKNYQGPMQPNEKDGDDQIPVAADGDAALLLEKSEEVFLKEEKMTPEEVEFNRMLDDFGPRFVEWWGTGILPIDADLLAPTVPGYKTPLRLLPAGMHPRLTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNELMAQELKKLTGGTLLLRNKYYIVIYRGRDFVPTSVAAVIAERQEMTKHVQDVEEKVRCKVHDVAPSREDESKSQAGSLAEFFEAQACWGRDISTEERERMRQEVTKAKNDKLAKKNECKLAVAQAKRLTAEKLLAKIEASLVPVGPDYDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDKVPKGFSLIYYRGKNYRRPVTLRPRNLLTKAKALQRSIAMQRHEALSQHVTELVGKIEKMKKELSEDEFSDGDDNRGDFNGEEHTDYKNDQLA 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03592 712 ProSiteProfiles CRM domain profile. 148 244 IPR001890 GO:0003723
Phco4g03592 712 Gene3D - 332 425 IPR035920 -
Phco4g03592 712 Gene3D - 543 642 IPR035920 -
Phco4g03592 712 Gene3D - 149 249 IPR035920 -
Phco4g03592 712 ProSiteProfiles CRM domain profile. 542 642 IPR001890 GO:0003723
Phco4g03592 712 ProSiteProfiles CRM domain profile. 331 428 IPR001890 GO:0003723
Phco4g03592 712 SUPERFAMILY YhbY-like 149 242 IPR035920 -
Phco4g03592 712 MobiDBLite consensus disorder prediction 118 139 - -
Phco4g03592 712 Pfam CRS1 / YhbY (CRM) domain 150 233 IPR001890 GO:0003723
Phco4g03592 712 Pfam CRS1 / YhbY (CRM) domain 333 417 IPR001890 GO:0003723
Phco4g03592 712 Pfam CRS1 / YhbY (CRM) domain 545 631 IPR001890 GO:0003723
Phco4g03592 712 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 99 694 IPR045278 GO:0000375|GO:0003729
Phco4g03592 712 MobiDBLite consensus disorder prediction 683 712 - -
Phco4g03592 712 Coils Coil 481 508 - -
Phco4g03592 712 Coils Coil 426 446 - -
Phco4g03592 712 FunFam CRS2-associated factor 1, chloroplastic 149 244 - -
Phco4g03592 712 SMART CRS1_YhbY_2 544 631 IPR001890 GO:0003723
Phco4g03592 712 SMART CRS1_YhbY_2 333 417 IPR001890 GO:0003723
Phco4g03592 712 SMART CRS1_YhbY_2 150 233 IPR001890 GO:0003723
Phco4g03592 712 FunFam CRM-domain containing factor CFM3B, chloroplastic 543 645 - -
Phco4g03592 712 Coils Coil 662 682 - -
Phco4g03592 712 FunFam CRS2-associated factor 1, chloroplastic 332 428 - -
Phco4g03592 712 SUPERFAMILY YhbY-like 543 641 IPR035920 -
Phco4g03592 712 SUPERFAMILY YhbY-like 333 424 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03592 Phco-Chr4 55830501 55835238 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03592 4 55830501 55835238 Phco4g03592 4 55830501 55835238 ECH
Phco4g03592 4 55830501 55835238 Phco5g00243 5 1985609 1990828 PCT