Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00231 ATGTCAGGCATTCCAAGACCAAGCCGGCAACAACGAATGGAATGTAAGAGAGGAAAAGAGAAGGTTCCAGCCAAAGAAGTAAACGTAAAAACAACGATGAAAATTAGAATTGTGTACACTGACCCTGATGCTACAGATTACTCAAGTGAAGAAGAAGATGATAAGTTGTTGAGCAATGGCTATCAATTTGATGGTTGCTCCAAGCGTGTTGTCAAGGAAATCTTGCTTCCATGCATGCAAAGCAAATCACAAGAAGAGAGTTCTTCAGAAGATGTAAACAGTGAAAAGATCAAAGCAAGTTCAGGCCATTTTTCAAGTAGGAGAATGAGGAAACCATCAAGCATGCACAAAGGTGTTCAACGTAGGAAATGGGGGAAATATGTAGCAGAAATTAGAGACCCTATTCAAGGGGTCAGAGTGTGGCTTGGTACATTTGATACTGAACAAGAGGCTGCTATGGCTTATGAGAGGAAGAAGAATGAGTTTGAAAGCTATTTGTTGGCTTCTAGCAAAAGGGATGCAGTGACTTTTGAGAGTTCCAAAGAAGTGTTGTTTCATCCATCTCCATCATCAGTGCTTGATGTCAGCACTACAAAATCTCCACTAGATGTTAATGACCTGAATGATTCAGTCAAAGAAAAGGTGAATGTGGAAAAAGTTGGTGATGGAGGAGGCATTGATGTAGAAGCAGTTAATAGTGGAGATAGTTCAACTCAACATTTGCTAGAGGAGCCAGTTGTGCCATCATTGTTTGGTCATGAAGATTTCTATTTGGATGAAGCAGAGAAAGGGGGAATGTTGCTTGGTAATGACTTTTATAATTTCTCAGACAATGACATCAAAGGTGTTTTTATGTGGAATGTGGAACATGGGGAAGCCACTGTCCTTCCCCCTGTGGACAGTGGTTTTGATGAGTTAGCTTGGATTGATGAAACTCTAAATTTGGAAAACCCATAA 957 0.4033 MSGIPRPSRQQRMECKRGKEKVPAKEVNVKTTMKIRIVYTDPDATDYSSEEEDDKLLSNGYQFDGCSKRVVKEILLPCMQSKSQEESSSEDVNSEKIKASSGHFSSRRMRKPSSMHKGVQRRKWGKYVAEIRDPIQGVRVWLGTFDTEQEAAMAYERKKNEFESYLLASSKRDAVTFESSKEVLFHPSPSSVLDVSTTKSPLDVNDLNDSVKEKVNVEKVGDGGGIDVEAVNSGDSSTQHLLEEPVVPSLFGHEDFYLDEAEKGGMLLGNDFYNFSDNDIKGVFMWNVEHGEATVLPPVDSGFDELAWIDETLNLENP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00231 318 CDD AP2 114 157 IPR001471 GO:0003700|GO:0006355
Phco5g00231 318 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Phco5g00231 318 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Phco5g00231 318 MobiDBLite consensus disorder prediction 103 117 - -
Phco5g00231 318 SUPERFAMILY DNA-binding domain 114 162 IPR016177 GO:0003677
Phco5g00231 318 ProSiteProfiles AP2/ERF domain profile. 115 178 IPR001471 GO:0003700|GO:0006355
Phco5g00231 318 MobiDBLite consensus disorder prediction 10 24 - -
Phco5g00231 318 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 162 - -
Phco5g00231 318 Gene3D AP2/ERF domain 116 166 IPR036955 GO:0003700|GO:0006355
Phco5g00231 318 MobiDBLite consensus disorder prediction 82 117 - -
Phco5g00231 318 SMART rav1_2 115 184 IPR001471 GO:0003700|GO:0006355
Phco5g00231 318 MobiDBLite consensus disorder prediction 1 24 - -
Phco5g00231 318 Pfam AP2 domain 116 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00231 Phco-Chr5 1905754 1906710 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco5g00231 AP2 5e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00231 5 1905754 1906710 Phco5g00231 5 1905754 1906710 ECH
Phco5g00231 5 1905754 1906710 Phco4g03585 4 55786845 55787312 PCT