Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03585 ATGGAATCGTTGAATGAAGTTTGTGAAGAAAGGAAACTGCGGATTTCATGCAGTGACCCAGATGCTACAGATAGTGAAGAAGAGAGTGAAGTAGGAAATGGAGAGAGTAAGAGAAATGGTTCAAAGAGAGTTGTTGTAGAGATGAAGTTTCCAAGCATGGTAGATGAACCAAACAAAAATCCACAGACAAAAGCAGAAAAAGGAACCTCGTCCACCAAGTCAAAAGGTGTAAGACTGAGACCATGGGGAAAATATGCAGCTGAGATACGAGTCCCTTTTGAAAATCGCCGAGTCTGGCTTGGTACTTTTAATACCGAGAAAGAGGCTTCAATGGCTTATAATAAAAAGAGGGAAGAGTTTGACAAAAAAAAAAGCTCTTCTAAAAGCAGATGCATCAGGGCATTCAAAGGCTGCAAAAATGGATTTTCCTCATCTTCCTTCTCATCCATCTTAGTTTGTTTCTTGTAA 468 0.3974 MESLNEVCEERKLRISCSDPDATDSEEESEVGNGESKRNGSKRVVVEMKFPSMVDEPNKNPQTKAEKGTSSTKSKGVRLRPWGKYAAEIRVPFENRRVWLGTFNTEKEASMAYNKKREEFDKKKSSSKSRCIRAFKGCKNGFSSSSFSSILVCFL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03585 155 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 117 - -
Phco4g03585 155 MobiDBLite consensus disorder prediction 1 21 - -
Phco4g03585 155 Gene3D AP2/ERF domain 73 126 IPR036955 GO:0003700|GO:0006355
Phco4g03585 155 CDD AP2 72 114 IPR001471 GO:0003700|GO:0006355
Phco4g03585 155 MobiDBLite consensus disorder prediction 1 77 - -
Phco4g03585 155 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Phco4g03585 155 ProSiteProfiles AP2/ERF domain profile. 73 136 IPR001471 GO:0003700|GO:0006355
Phco4g03585 155 SMART rav1_2 73 127 IPR001471 GO:0003700|GO:0006355
Phco4g03585 155 SUPERFAMILY DNA-binding domain 74 120 IPR016177 GO:0003677
Phco4g03585 155 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Phco4g03585 155 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Phco4g03585 155 MobiDBLite consensus disorder prediction 30 44 - -
Phco4g03585 155 MobiDBLite consensus disorder prediction 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03585 Phco-Chr4 55786845 55787312 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco4g03585 AP2 2.8e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00231 5 1905754 1906710 Phco4g03585 4 55786845 55787312 PCT