Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03391 ATGCCAACGATTCTGGTTACCGGTGGTGCCGGATACATCGGTAGCCACACCGTCCTCCAGCTTCTCCTCGCCGGTTACAATGTCTTCGCCGTCGACAACTTCGACAACTCCAGCGCAGTCGCCATCATCAGAGTCAAGGAACTCGCTGGAAAATTCGCAAATAACCTTTCCTTTGTCGAGTTAGACTTGCGGAACAGAGCTGCGCTCGAGAAAGTTTTTACAACCGCAAAGTTTGATGCTGTCATACATTTTGCTGGGCTGAAAGCAGTAGGTGAAAGTGTGCGGAAACCACTACTCTACTTTGATAACAACTTGATTGGGACAATCATTTTATTTCAAGTCATGGCTGCCCATGGATGTAAAAAGCTTGTGTTCTCATCTTCAGCAACTGTATATGGCTGGCCAAAGGAGGTTCCATGTACTGAAGAATTCCCTTTGTCAGCGACAAACCCATATGGACGGACCAAGCTTATCATCGAAGAGATTTGTCGTGATCTCTACTGTGCAGATTCAGATTGGAAAATTATACTGTTGAGATACTTCAACCCAGTTGGTGCACATCCTAGTGGTTGTATTGGTGAGGATCCTCGTGGAATTCCGAACAATCTCATGCCCTTTGTTCAACAAGTCGCAGTTGGCAGACTCACTTCACTGACAATTTTTGGAAACGATTATAAAACAAGTGACGGCACTGGAGTTCGCGATTACATTCATGTTGTTGACTTAGCAGAAGGGCACATTGCTGCTTTGCGTAAACTGGATGATGCTAAAATAGGTTGTGAAGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAAGGCTTTTGAACAGGCCTCTGGAAAGAAAATTCCACTTGCAATGGGTGGCCGTAGACCTGGAGATGCTGAAATTGTTTATGCTTCAACGAAGAAAGCGGAAAGAGAACTTAATTGGAAGGCTAAACATGGCATCGATGATATGTGTCGGGATCAATGGAACTGGGCTAGCAAAAACCCTTATGGCTATGGTAGATCTGGAGATTCCTCCAACTGA 1047 0.4479 MPTILVTGGAGYIGSHTVLQLLLAGYNVFAVDNFDNSSAVAIIRVKELAGKFANNLSFVELDLRNRAALEKVFTTAKFDAVIHFAGLKAVGESVRKPLLYFDNNLIGTIILFQVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSATNPYGRTKLIIEEICRDLYCADSDWKIILLRYFNPVGAHPSGCIGEDPRGIPNNLMPFVQQVAVGRLTSLTIFGNDYKTSDGTGVRDYIHVVDLAEGHIAALRKLDDAKIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIPLAMGGRRPGDAEIVYASTKKAERELNWKAKHGIDDMCRDQWNWASKNPYGYGRSGDSSN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03391 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 339 IPR036291 -
Phco4g03391 348 CDD UDP_G4E_1_SDR_e 3 332 IPR005886 GO:0003978|GO:0006012
Phco4g03391 348 Gene3D - 4 273 - -
Phco4g03391 348 Pfam GDP-mannose 4,6 dehydratase 5 328 IPR016040 -
Phco4g03391 348 PANTHER UDP-GLUCOSE 4-EPIMERASE 3 342 - -
Phco4g03391 348 FunFam UDP-glucose 4-epimerase 4 196 - -
Phco4g03391 348 Gene3D - 192 333 - -
Phco4g03391 348 PRINTS Nucleotide sugar epimerase signature 260 275 - -
Phco4g03391 348 PRINTS Nucleotide sugar epimerase signature 299 316 - -
Phco4g03391 348 PRINTS Nucleotide sugar epimerase signature 234 249 - -
Phco4g03391 348 FunFam UDP-glucose 4-epimerase 4 276 343 - -
Phco4g03391 348 NCBIfam UDP-glucose 4-epimerase GalE 4 338 IPR005886 GO:0003978|GO:0006012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03391 Phco-Chr4 54255348 54259490 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00231 4 1452589 1456578 Phco4g03391 4 54255348 54259490 PCT