Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00231 ATGGCATCGCGCGTCAGCATTGGCAACATCACCTCCTCCACGCCACCGTATGTTATTAATTCACCTCGTTTTCGTTCACCACATAAACTTTCTAACGCTCCTTCTCACCAAAACGCTGCGCATCATAACAACCTCATGCTTCACAAAACCGTCCTGGTAACCGGCGGAGCCGGTTACATCGGCAGCCACACCGTTCTTCAGCTACTCCTCGGCGGTTTCACAACTGTCGTCGTCGACAACCTCGACAATTCCTCCGAGGTTGCCATCCGTAGAGTCCGGGAGCTAGCCGGCGAGTTTGGGAATAACCTATCCTTCCACAAGGTGGACCTACGGGACAGAGCTGCACTAGAGCAAATTTTTGTTTCCAGACAGTTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTAGGAGAAAGTGTGAAAAAACCTTTACTATACTACAACAACAACTTGACTGGAACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAAAAGCTTGTGTTCTCGTCTTCAGCAACTGTGTATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCTCTGTCAGCGATGAATCCGTATGGTCGAACTAAGCTTATCATTGAAGAAATTTGTCGTGATGTCCACCATGCGGAGCCAGATTTGAAAATAATATTGTTAAGGTATTTCAACCCAGTTGGTGCACACCCTAGTGGTTATATTGGGGAGGATCCTCGAGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGGCCTACGCTGACAGTTTTTGGAAATGATTATAATACAGTTGATGGCACTGGGGTTCGGGATTATATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTACTTAAACTTGACGAACCTAGTATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAAGGAACATCGGTTTTGGAGATGGTTAGGGCTTTTGAAACAGCATCTGGAAAGAAAATTCCTCTTGTGATGGCTGGTCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCCACTAAAAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTACGGCTATGGAGATCAGGAGGATTCCACCGACTAA 1188 0.4562 MASRVSIGNITSSTPPYVINSPRFRSPHKLSNAPSHQNAAHHNNLMLHKTVLVTGGAGYIGSHTVLQLLLGGFTTVVVDNLDNSSEVAIRRVRELAGEFGNNLSFHKVDLRDRAALEQIFVSRQFDAVIHFAGLKAVGESVKKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHHAEPDLKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPTLTVFGNDYNTVDGTGVRDYIHVVDLADGHIAALLKLDEPSIGCEVYNLGTGKGTSVLEMVRAFETASGKKIPLVMAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGDQEDSTD 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00231 395 Gene3D - 239 380 - -
Phco4g00231 395 NCBIfam UDP-glucose 4-epimerase GalE 51 385 IPR005886 GO:0003978|GO:0006012
Phco4g00231 395 MobiDBLite consensus disorder prediction 18 38 - -
Phco4g00231 395 CDD UDP_G4E_1_SDR_e 50 379 IPR005886 GO:0003978|GO:0006012
Phco4g00231 395 PRINTS Nucleotide sugar epimerase signature 281 296 - -
Phco4g00231 395 PRINTS Nucleotide sugar epimerase signature 307 322 - -
Phco4g00231 395 PRINTS Nucleotide sugar epimerase signature 77 93 - -
Phco4g00231 395 PRINTS Nucleotide sugar epimerase signature 346 363 - -
Phco4g00231 395 Gene3D - 51 320 - -
Phco4g00231 395 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 387 IPR036291 -
Phco4g00231 395 PANTHER UDP-GLUCOSE 4-EPIMERASE 48 391 - -
Phco4g00231 395 FunFam UDP-glucose 4-epimerase 4 323 391 - -
Phco4g00231 395 Pfam GDP-mannose 4,6 dehydratase 52 375 IPR016040 -
Phco4g00231 395 FunFam UDP-glucose 4-epimerase 51 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00231 Phco-Chr4 1452589 1456578 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00231 4 1452589 1456578 Phco4g00231 4 1452589 1456578 ECH
Phco4g00231 4 1452589 1456578 Phco4g03391 4 54255348 54259490 PCT