Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03367 ATGGACGAAGAATTGGAGATTGGTGAGGGTGTGCAAGTGCAACATCAAAACAAAGATGCTGGCTATTCACTAAACCCTGAACTCCCCGAAATATTAAAACCCCAAGAATATGATGAAATTTCACAAGATAAGAATGTGGTTGAAGCAAGGGAACATTTGCATCCAGGTCTATTTTCTGATGGTGCTGGTGTCATGGTTGAAGAATTAATGGTGAAAAGTTGCAATGGTTCTACCCTAGATATCGGTACTTTGACTAATCCAGGGTCTTTGCATAATAGCCGGAGTCCATGGCGGCATATTTATCAGCCGTTTGCTGATTTGCGTGCGGGAAGGGACTGTATTATAGCTAGAAAGAGTGTTCAAGCTACATCTAGTGCTTGGGAGGATTTTGGGTCCATGTCTTCCCGAGAGATATTAGCTAGAAAATCAGTCAATTATGATCATGGCAATGTCGTGCAGCACTTGTCCTCGGATGAGCATACAGCTGAACAAAAAGAGGATGAAGGTGATGATCGCGAAGGAATGCAAACAAAATCTGTACACAGATCAGGATTTGCAGAGTATTTTCGTAGAAGTACATCGAAGGGAAAGGGCATTGCATGTAAAGGTCCATCTTCTAAGGGTTTATATGTCGAGCCCAGAGATCAGAACCTGATGAAGTCTGGCATTGATACTCAGATGGATTCTAATGCATTTCTGAGCTCCGGTTTAAAGATTGCAGAGTCTCCTTATAATGCTACAGTGCCAGGATTTGGTGGGTCTGACACTGATGGTGTGACTTTGAGAGAATGGTTGAAATCTAGGCACCACAAAGGAAGCAAAACAGAGCATTTAAGTATATTTAGAAAAATTGTAGACTTGGTTGGTGGTTCTCACTCTCAGGGAGTTGCAATGCACAATCTGTACCCTTCTTATATTAAATTGCTACCATCCAACCATGTTATGTACCTTGGGTTGCCAACTCAGAAACAGAAATTAGACTGTGTTGCGAATTCTGAAGTTCTTCAGCTAGAGAATTCTCTTAATAGAAAAAGACTGTGGGAGAAGGTAAAATCTCCCTCTCTAAATTTGCGGATGAAGAAACAGAAATTCATTGATATTAAAGTCAATGCAGTGGCATCACAAGATTATTGCAATGAATACGAGGAAGATATCCAATTTTCTAATCATAATATTCAGAGAACGTCTCGCATCCCTCACATATCTAATGCAGGTCAATTGCAATCGACTTCTTTAAATGAAAGATTGGAAGAAGAATGGTATACAAGTCCTGAGGGTGGTTGCACAATATTATCAAATATCTACTGTCTGGGAGTCCTTTTTTTTGAGTTATTTAATCATTTTGATTCAGAAAGAGCACATACTGCTGCAATGTCTGCTCTTCGTGGTAGGATTCTTCCTTCAGCTTTTCTATCAGATTATCCTAAGGAAGCTGGATTTTGCCATTGGATGCTGCATCCTGAACCATCATCACGTCCAACAATAAGGGAGATCTTACAATCTGAAGTGATAAATGGAACACGAGAGGTGGACTGTGAGGAATTATTATCAAGTCTTAACCAATATGATGCAGAATCAGAATTGCTATTGCATTTCCTTATCTCACTGAAAGAGCAGAAACACGTGGATGCCCACAAATTGGCTGAAGAAATCAGATGCATGGAATCAGATATAGAAGAGGTGGAGAGGAGACATGATTTGAGACTATCGTTGCCTCCCACTAGCTTGGAGAACAACTCATCTTGTCGAATAGAGAATGTATCTCTTCTCAAAGAATCTAAAAGTGCAGAAATATTACCACCAGTATACACAATTTCTAAAGCAAATGAACTGAGACTAATGAAAAATATGTGCCTACTTGAAAATGCTTACTTTTCTACGAGATCTACAATTAAGCTTCCTGGAACAGAAACAGCAACCCGCCCAGATAAAGATGTACTGAGAAATTCTGACAACTTATGTGTAGCTCAAAAAGACATGGAAAAACATACAGATACTTTAGGAGCTTTCTTTGACGGTTTGTGCAAGTATGGGCGTTATCACGACTTTGAAGTGCGGGGCATACTAAGAACTGCTGACTTTAACAATCCTGTAAATGTAATATGTTCTCTGAGTTTTGATAGAGATGGAGACTACTTTGCTGCTGCTGGGATATCAAAGAAAATAAAAATTTTCCAGTTCGATGCAATTTTCAATAACTCTGTCGACATCCATTATCCTGTAGTTGAGATGGTAAACAGATCAAGGCTCAGTTGTGTTTCCTGGAATAGCTACGTCCAGAACTATCTTGCCTCCACAGACTATGATGGTGTAGTTCAGCTATGGGATGCCAATACAGGTCAAGGGTTTTCTCGATTCACCGAACATGAAAAGAGGGCCTGGTCTGTTGATTTCTCTCTGGTATGCCCTACTAAATTTGCCAGTGGGAGTGATGACTGTTCTTTGAAACTGTGGAGTATCAATGAGAAAAACAGTTTAGGCACAATAAGGAATGTTGCTAATGTCTGTTGTGTTCAGTTCTCTGCTCATTCATCCCATATGCTGGCCTTTGGATCCGCCGATAATTCGGCTTATTGCTATGATCTTCGCTTTCTTAGAACCCCTTGGTGTGTGTTGGGTGGCCATCGTAAATCTGTAAGTTTTGTCAAATTCTTGGACGCTGAAACACTAGTTTCTGCATCAACCGATAACACCTTGAAGATCTGGGATCTCAACAGAACCTCTCCTGTGGGTCGATCAACTAGTGCTTGCAGCTTAACTCTGACAGGACATACTAATGAGAAGAATTTTGTGGGTTTATCAGTTGCTGATGGATATATAACATGTGGTTCAGAAACAAATGAGGTCTATGCCTACTATAAATCTTTTCCCATGCCAGTCATTTCGCACAAGTTTGGGTCCATTGATCCTGTTTCTGGTAAAGAGACTGATGATGACAATGGTCAATTTGTTTCAAGTGTCTGCTGGAGAGGGAAATCAGACATGCTTATTGCAGCCAATACAAGTGGATCTATAAAAGTTCTACAGATGATTTGA 3036 0.4022 MDEELEIGEGVQVQHQNKDAGYSLNPELPEILKPQEYDEISQDKNVVEAREHLHPGLFSDGAGVMVEELMVKSCNGSTLDIGTLTNPGSLHNSRSPWRHIYQPFADLRAGRDCIIARKSVQATSSAWEDFGSMSSREILARKSVNYDHGNVVQHLSSDEHTAEQKEDEGDDREGMQTKSVHRSGFAEYFRRSTSKGKGIACKGPSSKGLYVEPRDQNLMKSGIDTQMDSNAFLSSGLKIAESPYNATVPGFGGSDTDGVTLREWLKSRHHKGSKTEHLSIFRKIVDLVGGSHSQGVAMHNLYPSYIKLLPSNHVMYLGLPTQKQKLDCVANSEVLQLENSLNRKRLWEKVKSPSLNLRMKKQKFIDIKVNAVASQDYCNEYEEDIQFSNHNIQRTSRIPHISNAGQLQSTSLNERLEEEWYTSPEGGCTILSNIYCLGVLFFELFNHFDSERAHTAAMSALRGRILPSAFLSDYPKEAGFCHWMLHPEPSSRPTIREILQSEVINGTREVDCEELLSSLNQYDAESELLLHFLISLKEQKHVDAHKLAEEIRCMESDIEEVERRHDLRLSLPPTSLENNSSCRIENVSLLKESKSAEILPPVYTISKANELRLMKNMCLLENAYFSTRSTIKLPGTETATRPDKDVLRNSDNLCVAQKDMEKHTDTLGAFFDGLCKYGRYHDFEVRGILRTADFNNPVNVICSLSFDRDGDYFAAAGISKKIKIFQFDAIFNNSVDIHYPVVEMVNRSRLSCVSWNSYVQNYLASTDYDGVVQLWDANTGQGFSRFTEHEKRAWSVDFSLVCPTKFASGSDDCSLKLWSINEKNSLGTIRNVANVCCVQFSAHSSHMLAFGSADNSAYCYDLRFLRTPWCVLGGHRKSVSFVKFLDAETLVSASTDNTLKIWDLNRTSPVGRSTSACSLTLTGHTNEKNFVGLSVADGYITCGSETNEVYAYYKSFPMPVISHKFGSIDPVSGKETDDDNGQFVSSVCWRGKSDMLIAANTSGSIKVLQMI 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03367 1011 SUPERFAMILY Protein kinase-like (PK-like) 410 514 IPR011009 -
Phco4g03367 1011 PRINTS G protein beta WD-40 repeat signature 806 820 IPR020472 -
Phco4g03367 1011 PRINTS G protein beta WD-40 repeat signature 890 904 IPR020472 -
Phco4g03367 1011 PRINTS G protein beta WD-40 repeat signature 763 777 IPR020472 -
Phco4g03367 1011 Coils Coil 544 564 - -
Phco4g03367 1011 ProSitePatterns Trp-Asp (WD) repeats signature. 890 904 IPR019775 -
Phco4g03367 1011 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 872 905 - -
Phco4g03367 1011 PANTHER PROTEIN SPA1-RELATED 2 50 1011 IPR044630 GO:0009640
Phco4g03367 1011 SMART WD40_4 779 819 IPR001680 GO:0005515
Phco4g03367 1011 SMART WD40_4 822 861 IPR001680 GO:0005515
Phco4g03367 1011 SMART WD40_4 865 903 IPR001680 GO:0005515
Phco4g03367 1011 SMART WD40_4 970 1009 IPR001680 GO:0005515
Phco4g03367 1011 SMART WD40_4 737 776 IPR001680 GO:0005515
Phco4g03367 1011 SMART WD40_4 687 726 IPR001680 GO:0005515
Phco4g03367 1011 SMART WD40_4 914 953 IPR001680 GO:0005515
Phco4g03367 1011 SUPERFAMILY WD40 repeat-like 694 1008 IPR036322 GO:0005515
Phco4g03367 1011 ProSiteProfiles Trp-Asp (WD) repeats profile. 743 785 IPR001680 GO:0005515
Phco4g03367 1011 ProSiteProfiles Trp-Asp (WD) repeats profile. 872 912 IPR001680 GO:0005515
Phco4g03367 1011 MobiDBLite consensus disorder prediction 158 178 - -
Phco4g03367 1011 Gene3D Transferase(Phosphotransferase) domain 1 257 513 - -
Phco4g03367 1011 MobiDBLite consensus disorder prediction 153 182 - -
Phco4g03367 1011 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 828 IPR001680 GO:0005515
Phco4g03367 1011 ProSitePatterns Trp-Asp (WD) repeats signature. 763 777 IPR019775 -
Phco4g03367 1011 Pfam WD domain, G-beta repeat 871 903 IPR001680 GO:0005515
Phco4g03367 1011 Gene3D - 671 1011 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03367 Phco-Chr4 54072562 54078813 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00253 4 1605235 1614085 Phco4g03367 4 54072562 54078813 PCT